PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41382.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 330aa    MW: 37685.4 Da    PI: 5.6852
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41382.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-312882155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprl+Wt+eLH+rF+eav+qLGG++kAtPk + ++m+++gLtl+h+kSHLQkYRl
  KFK41382.1 28 KPRLKWTCELHHRFIEAVNQLGGPHKATPKGLIKTMEIPGLTLYHLKSHLQKYRL 82
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-272682IPR009057Homeodomain-like
SuperFamilySSF466896.81E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-212883IPR006447Myb domain, plants
PfamPF143795.8E-23130177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MCLLMDNNNN NGNDQETKMS LVLSTDAKPR LKWTCELHHR FIEAVNQLGG PHKATPKGLI  60
KTMEIPGLTL YHLKSHLQKY RLGKSLKFDD NKLEAVSSAS ENQEAESKND SRDLRGSITE  120
ENSNPANEGI EITEALQMQM EVQKKLHEQI EVQRHLQVKI EAQGKYLQSV LIKAQQTLAG  180
YTSSTLGMDF ARTELSRLAS MVNPSSSFSE LTQAEEEDEE HFLWYKKPEN RGIRQPRCSV  240
ESSLTSSESS ETKLDNNNDE RKSIELPLME IKSEVIKPKK RTLNDVVYME QQPLKKREFE  300
VDDDEQHLKL SLNSYKKDME TCPNIGLGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731541.10.0myb family transcription factor PHL8 isoform X1
SwissprotF4I2741e-180PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A087HGY00.0A0A087HGY0_ARAAL; Uncharacterized protein
STRINGA0A087HGY00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-180G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]