![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK41381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 329aa MW: 37614.4 Da PI: 5.6852 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.5e-31 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rF+eav+qLGG++kAtPk + ++m+++gLtl+h+kSHLQkYRl KFK41381.1 28 KPRLKWTCELHHRFIEAVNQLGGPHKATPKGLIKTMEIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 26 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-15 | 27 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-21 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 5.8E-23 | 129 | 176 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MCLLMDNNNN NGNDQETKMS LVLSTDAKPR LKWTCELHHR FIEAVNQLGG PHKATPKGLI 60 KTMEIPGLTL YHLKSHLQKY RLGKSLKFDD NKLEVSSASE NQEAESKNDS RDLRGSITEE 120 NSNPANEGIE ITEALQMQME VQKKLHEQIE VQRHLQVKIE AQGKYLQSVL IKAQQTLAGY 180 TSSTLGMDFA RTELSRLASM VNPSSSFSEL TQAEEEDEEH FLWYKKPENR GIRQPRCSVE 240 SSLTSSESSE TKLDNNNDER KSIELPLMEI KSEVIKPKKR TLNDVVYMEQ QPLKKREFEV 300 DDDEQHLKLS LNSYKKDMET CPNIGLGFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-19 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK41381.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013731542.1 | 0.0 | myb family transcription factor PHL8 isoform X2 | ||||
Refseq | XP_018451036.1 | 0.0 | PREDICTED: myb family transcription factor PHL8 isoform X1 | ||||
Swissprot | F4I274 | 0.0 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A087HGX9 | 0.0 | A0A087HGX9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HGY0 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69580.1 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|