PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41227.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 337aa    MW: 38154.8 Da    PI: 7.2123
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41227.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68e-31211270159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  KFK41227.1 211 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVAlGCPVRKQVQRCLEDMSILITTYEGTHNHP 270
                 58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-32196272IPR003657WRKY domain
SuperFamilySSF1182907.59E-28204272IPR003657WRKY domain
PROSITE profilePS5081128.897206272IPR003657WRKY domain
SMARTSM007744.9E-37211271IPR003657WRKY domain
PfamPF031063.0E-27212270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGIDLSLKLE AEEKEKDIEG SKQSCEKKDE EEEGDASDDE DERMVIKEGE IHNSCLGSRT  60
RKEENERQEL LKLQIQMEHV KEENTRLRKL VEKTLQDYRH LEMKFPVIDQ TNMIDLETFL  120
GAKGKWCVDI TSKAPKRRAE RSPSVVGELG LSLSLQKKLK HEESKEADQS HQQRYNSSST  180
LDTNAPRVIL SSPGNRKARV SVRARCETAT MNDGCQWRKY GQKTAKGNPC PRAYYRCTVA  240
LGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS TASTSPFLLL DSSDNLSHSS  300
YFQQNNRSIR SLNFDDPSSR GGGDHVSSSQ KQLNWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22198274176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41227.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391179.11e-180probable WRKY transcription factor 9
SwissprotQ9C9F01e-170WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A087HGH50.0A0A087HGH5_ARAAL; Uncharacterized protein
STRINGA0A087HGH50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-127WRKY DNA-binding protein 9