PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41216.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 378aa    MW: 43186.6 Da    PI: 4.5389
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41216.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34161082102
                   HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Flkk ye+++d++ +++isws+ng nsfv++d++ f+ ++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+++
    KFK41216.1  16 FLKKCYEMVDDSSSDSIISWSQNGdNSFVISDSTIFSVQLLPKYFKHSNFSSFVRQLNIYGFRKVDADR---------WEFANDGFVRGRKDLLKNV 103
                   9********************88769****************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                   kr+k+
    KFK41216.1 104 KRRKN 108
                   ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3211106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3412106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5312106IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3016106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVKSADGGGS SSIAPFLKKC YEMVDDSSSD SIISWSQNGD NSFVISDSTI FSVQLLPKYF  60
KHSNFSSFVR QLNIYGFRKV DADRWEFAND GFVRGRKDLL KNVKRRKNVQ SSDQSKILYK  120
EEESTTEASQ EEPEKSGLWK EVDILKGDKN VLAQELIKVR QYQEVTDTNM LHLKDRVQGM  180
EESQQEMLSF LVMVMQNPSL LIQLLQPKKE NSWRKAEGAK IFEEVIEEGA EILEEVEPNS  240
TGLPLVTYQP PSDETSRSSP SDINDFLRNV DILKFCMDEN HVPLIIPDLY DDGAWEKLLL  300
LSPSKNKKKK QENDVKKGKD DSTLEEGGTM ELDRSRILEL IDEEMEKQDD FDFGQLTPEK  360
SRSLEILTKQ MGLLASNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-24810612120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105LKNVKRR
2100106KNVKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887161.10.0heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A087HGG40.0A0A087HGG4_ARAAL; Uncharacterized protein
STRINGA0A087HGG40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-169heat shock transcription factor A8