 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
KFK40911.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
| Family |
TCP |
| Protein Properties |
Length: 405aa MW: 43226.4 Da PI: 6.8538 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KFK40911.1 | genome | MPIPBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 129.2 | 4.2e-40 | 56 | 198 | 4 | 105 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88
k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++
KFK40911.1 56 TKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsksvplygalgl 154
699****************************************************************99988888888888655557777778888888 PP
TCP 89 .................................kaaksaakskksqksaa 105
+ +++ +q+ ++
KFK40911.1 155 thhhhqydeqggafgahstpllgfhhhlqqqhhQ------NQNLNQRLTT 198
8877778888888887776666666432222110......2222222222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MDLSDVRNND GAAARGGSRQ LIDASLSIVP RSTSLEDAAL TTTSSAATAT TSGVLTKRST 60
KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI 120
PANFSSLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHHHQ YDEQGGAFGA HSTPLLGFHH 180
HLQQQHHQNQ NLNQRLTTNQ LDQAPAETIP GPDGENFSRK RYRSVDLSKE NDDEKQNEDK 240
SFKESETPSA GAAPMWAVAP ATSRPTAGNT YWMLPVQTAA GNQPAAMESS SNTNRAQMWP 300
FVNSAGAGPA TQFMAGPGFS FPMDQYRGSP LQLGSFLAQP QQPTQNLGLS MPDSNLGMLA 360
ALNGGYSRGG NANAEQGNNA VEHKKKQAQQ SDPDDDSREE NSNSS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079131 | 2e-69 | AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence. |
| GenBank | AC079604 | 2e-69 | AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence. |
| GenBank | AY081344 | 2e-69 | AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds. |
| GenBank | BT008493 | 2e-69 | BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds. |
| GenBank | CP002684 | 2e-69 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
