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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK40679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 43375.6 Da PI: 6.5102 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 281 | 319 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L KFK40679.1 281 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 319 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.157 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-6 | 280 | 323 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-9 | 280 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0071 | 280 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-11 | 280 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MAEEFQATAA ICGGGSGAWW NSPRSVMSPS DHFLSPSFGA AITSDDFGSQ ENNIKSRMSC 60 TDNNLVFGQR EPDSDSGGST VTIDSTLQMM GLRFSSNSSS DWTQPILQED LNSSFIRSSQ 120 DQDHSQGFLS TTTSPYILNP ACSSSPSTSS SSSLLRTFYD PEPSPYNFVS TTSCSINDPQ 180 LTWANKTNPN HHQAAYGLVN NFSNNTSSRP FWSSSPSTNL INSTHNSFVT TPQISSTRLE 240 DKNKNLKTRA QSESLKRAKD NESAAKKQRV ATPSPLPTFK VRKENLRDQI TSLQQLVSPF 300 GKTDTASVLQ EAIEYIKFLH DQVTVLSTPY MKQGVSTQQQ QQQQISGKSK NQDVNENHEL 360 RGHGLCLVPL SSTFPVANET TADFWTPTFG GNNFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK40679.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF380649 | 0.0 | AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. | |||
GenBank | AY113072 | 0.0 | AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001322872.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_564782.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q94JL3 | 0.0 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | A0A087HEX7 | 0.0 | A0A087HEX7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HEX7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8062 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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