PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40029.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 268aa    MW: 30631.5 Da    PI: 10.5149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40029.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.8e-1412861894
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                +p + +++ +++   s+++++++e+grsW+v++  +k+++  ++ ++GW+ Fv++n L + + ++F ++g+++f+l +
  KFK40029.1 12 IPHDLVKTLSEN-DLSRKMKIKTEWGRSWKVEI--SKNPRFyFMEKAGWETFVRENFLGDSELLTFIHKGKMRFTLII 86
                666677666433.47889***************..******555569*********************9999997765 PP
2B339.21.3e-121862631294
                 HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ++ l +p +fa++h+++  + ++ ++ d e  +sW+v +   k+   +v+++GW + vk+  L+ g ++ F++++ +e  l++
  KFK40029.1 186 YLNFLAIPVSFAKDHMQE--GRTMFKIHDsEMKKSWDVAY--VKRNTNTVFSAGWIQLVKEYPLRLGNTCKFTVINPTE--LRL 263
                 457799*********744..5668899995666*******..7777889************************876444..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.42190IPR003340B3 DNA binding domain
SMARTSM010194.4E-10390IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-131191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-131195IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-121186IPR003340B3 DNA binding domain
CDDcd100172.31E-91288No hitNo description
SuperFamilySSF1019363.73E-16171266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-16172267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.392175268IPR003340B3 DNA binding domain
CDDcd100171.54E-8178254No hitNo description
SMARTSM010192.1E-10178264IPR003340B3 DNA binding domain
PfamPF023623.9E-9185261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALLLLFVNR AIPHDLVKTL SENDLSRKMK IKTEWGRSWK VEISKNPRFY FMEKAGWETF  60
VRENFLGDSE LLTFIHKGKM RFTLIIYNKD GKEMLQPRQA APFLASSSRI KTEDVKKEEV  120
VVSSELSSLD PVTPAAESNG RRKLNFGKMK AEESQSSKRA KTKFRDSAGA SSSSATGFTI  180
SIKKSYLNFL AIPVSFAKDH MQEGRTMFKI HDSEMKKSWD VAYVKRNTNT VFSAGWIQLV  240
KEYPLRLGNT CKFTVINPTE LRLDVLKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873422.11e-105B3 domain-containing protein REM23
SwissprotQ9LXE16e-86REM23_ARATH; B3 domain-containing protein REM23
TrEMBLA0A087HD270.0A0A087HD27_ARAAL; Uncharacterized protein
STRINGA0A087HD260.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.19e-82B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]