PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39756.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 333aa MW: 39093.9 Da PI: 4.4207

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39756.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.7	4.1e-15	91	175	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k+ k + ss++++f++l+ KFK39756.1 91 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRLEKSETQCRRMIDNLKRKYRKEKTKIDK-SGLGSSKWSFFNKLD 175 ***********************************78899*******************99998.589999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-20	90	176	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGDSEDESGY PKKFYSLNRQ NHPMYSRPIP KRHAYYHEEE DEQEDDEIEE YRQVEEDEGG 60 YSRGKRQKPN NKPVSGFEFA GPSDAKVAYD WREQEAFVLL EVWGDRFLQL GRRSLRNEDW 120 NEVAEKVSEE LRLEKSETQC RRMIDNLKRK YRKEKTKIDK SGLGSSKWSF FNKLDMLLGS 180 SPKSELGLAC GVDSGEFVFM NTKVYLDKSN GFDEMMDSPG DSEEDGVDDD ENDREVDYER 240 NKLNDAASYK LLAESVERFG KVYEKMEKSK KEQMKVMEKM RADFQKDLEL QKKQIVDRAQ 300 TEIARLREEQ ENHDGESEDE EMENDSDVNL SEE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39756.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002883522.1	1e-177	trihelix transcription factor ASIL2
TrEMBL	A0A087HCA4	0.0	A0A087HCA4_ARAAL; Uncharacterized protein
STRING	A0A087HCA4	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-154	Trihelix family protein