 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
KFK39174.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
| Family |
HB-other |
| Protein Properties |
Length: 345aa MW: 38409.5 Da PI: 8.1322 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KFK39174.1 | genome | MPIPBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 15.8 | 2.4e-05 | 19 | 74 | 12 | 55 |
HHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 12 leeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
++e+e+ ++ ++ p++ e LA+k ++ +q+ +WFqNrR+
KFK39174.1 19 VTEMEAILQQhnTSMPNRMVLEALADKFsdtverkgkiVVQFKQIWNWFQNRRYAL 74
5566666664447778888888888888888888887788999**********965 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFNLPEVT EMEAILQQHN TSMPNRMVLE ALADKFSDTV ERKGKIVVQF 60
KQIWNWFQNR RYALRARGNK GPGKLNVSSM PRGVDPTNQM RNVVQPLAAP KTIHMTGNLP 120
AMMPATSVPG VMRSGSDNSY LEFEAKSARD GAWYDVEAFL AHRNLDTGDP EVQVRFLGFE 180
VEEDEWINVK KHVRQRSLPC EASECVAVLA GDLVLCFQEG KDQALYYDAI VLDAQRRRHD 240
VRGCRCRFLV RYSHDQAEQE IVPLRKICRR PETDYRLQQL HSGANDLANS NQFQKPALDV 300
AVKNPTSQSG ATVPDVAPEQ KDPSLIATSV QPSSSAAPVL PAGTA
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 9e-45 | 141 | 272 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 9e-45 | 141 | 272 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 9e-45 | 141 | 272 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY093042 | 0.0 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
| GenBank | BT003428 | 0.0 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G18380.3 | 0.0 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
