PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38776.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 454aa    MW: 49311.1 Da    PI: 10.0347
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38776.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.9e-1595182186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +Li+a  ++  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +  ++  +++s++++fd+l+
  KFK38776.1  95 CWSERATAVLIDAWGDRYLELSRGNLKQKHWKEVAEIVssreDYGKTPKTDIQCKNRIDTVKKKYKQEKVRIVNG--GARSRWVFFDKLD 182
                 7*************************************85444455566778*******************9997..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2493184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDDEEEIRSH ASPTGSGESD PSSSPPAGRI TVTVASAGPP SYSLTPPSSL SSHHKDPDAL  60
ALALLPTQTS GGGGGGGGGG CSNGRSGGGG GREDCWSERA TAVLIDAWGD RYLELSRGNL  120
KQKHWKEVAE IVSSREDYGK TPKTDIQCKN RIDTVKKKYK QEKVRIVNGG ARSRWVFFDK  180
LDRLIGSTAK IPAVCPGISR GGSSGVGAKI PMGIPMNNRS NVYNQQAKAA TTPPFNNLDR  240
LIGATARVSA TPFSGSVGVG GAVNVPMGIP MSNRSTPFGQ QGRMVLPQQQ QGSGMMVKRC  300
SESKRWSFRK RNTSDSESES EPAMSDDSGD SLPPPPLSKR LKTEEKKNQD SGDGEGNKWR  360
DLTRAIMRFG EAYEQTENAK LQQVVEMEKE RMKFLKELEL QRMQFFVNTQ VELSQLKQHG  420
RRIGNSSNDH HSYKKKNNNK NNINSIVNNN DMGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188034.10.0sequence-specific DNA binding transcription factor
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A087H9H40.0A0A087H9H4_ARAAL; Uncharacterized protein
STRINGA0A087H9H40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.10.0sequence-specific DNA binding transcription factors