PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38737.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 273aa    MW: 31146.7 Da    PI: 6.4262
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38737.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-39391381100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am++++++++ara+dPv G++ +i+klq q++ +k+el+ + +
  KFK38737.1  39 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLSPPDKDAAMHTIMFQSDARANDPVGGCYDIIRKLQLQIQYTKNELEFVLQ 137
                 7*********************************************************************************************98877 PP

      DUF260 100 e 100
                 +
  KFK38737.1 138 Q 138
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.78338139IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3639134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPSGKPSSVF PLHPKPTPLK PSSNTSSSSN NNNNSTNQAC AACKYQRRKC APDCLLAPYF  60
PHDRHRQFLN AHKLFGVSNI TKIIKSLSPP DKDAAMHTIM FQSDARANDP VGGCYDIIRK  120
LQLQIQYTKN ELEFVLQQLA MFRDRAHQQQ QEPHIQMQEP EDISSFSSSC NLNNNNTIPY  180
NYPLNHVQEP NLQQQQQQYC SSGNFNGLQE DMWCLQLQDS STTVNMKNGF IDECEDIKPV  240
EEVSSERHEF EHHEAFVEQR KLDLASAQYI ISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-254013312105LOB family transfactor Ramosa2.1
5ly0_B2e-254013312105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188001.11e-167LOB domain-containing protein 22
SwissprotQ9LRW11e-168LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A087H9D50.0A0A087H9D5_ARAAL; Uncharacterized protein
STRINGA0A087H9D50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-134LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]