PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38489.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 368aa    MW: 41551.9 Da    PI: 6.4365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38489.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-1522951288
                HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                 ++ l +p  f++++  g  +++s+ ++l++  s   Wevk+  ++++    lt+GW++Fv +++L++gD++vF++dg+ 
  KFK38489.1 22 FHCHLNIPIAFFSKYlaGTTNKGSVVVKLRSdASDVIWEVKM--DGQR----LTQGWQKFVTSHDLRVGDILVFRHDGDL 95
                5678************9777779999999997888*******..9888....***********************88753 PP
2B3536.1e-17162257198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+ + +++++l++++l lp +f +++g+ +++  +++l +e+g+ W++ l   k  gr+++++GWk+F+ +n+ +++ +++Fkl++ +++++v+++++
  KFK38489.1 162 FLVARVTASNLSKDILLLPMDFSRSNGLMNRK-CEIILLNEDGKPWRLLLGNYKLHGRVYIKSGWKSFCCENRGRANGVLTFKLVQ-DGTTPVLQLYS 257
                 66778999******************887655.59***************77788888**************************99.67778888876 PP
3B338.71.8e-12268359193
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                 f++  ++ ++++++ l+lp +f++++g+++++  +++l d+ g + +  l  + k g++ l+k W+eF++ ng+ +g+++ ++l+++ ++++ +
  KFK38489.1 268 FLTLSLTTYTFRTKKLCLPATFVKANGIENAR--KIILVDRYGIKRTTSLEPEDKYGSMRLGKEWREFCEVNGVYTGESFKLELIKEeEDTTIH 359
                 6667789999****************988555..8********9999999778888899**************************986666444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-216107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-219112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74411105IPR003340B3 DNA binding domain
CDDcd100174.83E-1812102No hitNo description
SMARTSM010194.7E-2214105IPR003340B3 DNA binding domain
PfamPF023621.7E-102394IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-16159255IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-16161256No hitNo description
SuperFamilySSF1019361.53E-17161258IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-15162258IPR003340B3 DNA binding domain
SMARTSM010195.8E-21162259IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422162259IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-14260366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-13262365IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-11268359IPR003340B3 DNA binding domain
SMARTSM010198.6E-13268367IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011268366IPR003340B3 DNA binding domain
CDDcd100174.09E-10279362No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKNGSNSTPR TPHFFKPLLP GFHCHLNIPI AFFSKYLAGT TNKGSVVVKL RSDASDVIWE  60
VKMDGQRLTQ GWQKFVTSHD LRVGDILVFR HDGDLLFHVT PFGPSCCEIP YDDDDGDNGD  120
GDDDDDDDDG DGDDVIQLSS ESNSEKYQHI REAGSSLDHS HFLVARVTAS NLSKDILLLP  180
MDFSRSNGLM NRKCEIILLN EDGKPWRLLL GNYKLHGRVY IKSGWKSFCC ENRGRANGVL  240
TFKLVQDGTT PVLQLYSSSS SSTSQYRFLT LSLTTYTFRT KKLCLPATFV KANGIENARK  300
IILVDRYGIK RTTSLEPEDK YGSMRLGKEW REFCEVNGVY TGESFKLELI KEEEDTTIHL  360
LKFCSKES
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38489.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488930.11e-168PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A087H8N70.0A0A087H8N7_ARAAL; Uncharacterized protein
STRINGA0A087H8N70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-85B3 family protein