PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38385.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 536aa    MW: 58695.4 Da    PI: 6.8262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38385.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix668.1e-21153240186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +L++a++++ ++l+rg+l++ +Weev+  +  r +++++s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  KFK38385.1 153 EWSDAAISCLLDAYSDKFTQLNRGNLRGRDWEEVAVSVseRCEKLNKSVEQCKNKIDNLKKRYKLERHRMSSGGGTSASHWPWFKKME 240
                 5************************************9888899*****************************999999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-22151242No hitNo description
SMARTSM005950.0039161244IPR006578MADF domain
Gene3DG3DSA:3.40.1160.108.6E-68287528IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536338.51E-55295528IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.80E-120297529No hitNo description
PfamPF006965.2E-25298508IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNH HHQVLHHQPY APRRFTPKPS NQIHLPHHQR NGEEDDENDV  60
VVEATSAFHG VNPFSAEENS NPYDNNAAID GDDDLDANRS RIGGVRVVEK RQNQEELSDG  120
GTTNGGETTP YGSFKRPRTS SSSAGEYRKD REEWSDAAIS CLLDAYSDKF TQLNRGNLRG  180
RDWEEVAVSV SERCEKLNKS VEQCKNKIDN LKKRYKLERH RMSSGGGTSA SHWPWFKKME  240
EIVGSSLNSK GASDEDRSGS SMGNAVKPAR RYPLITYSPG VQINNVKSKA TSNPRWRRVV  300
LKISGAALAC TGPNNIDPKV VNLIAREVAM ACRLGVEVAI VVGSRNFFCG GTWISATGLD  360
RTTAYHISMM ASVMNSALLH SSLEKMGVQA RLQTAISVEG VGEPYNRQRA TRHLDKGRVV  420
IFGGIGATLG NPLLSSDASA ALRAIDINAE AVVKGTNVDG VYDCHSQDNN VTFEHITFQE  480
LASRGLTSMD TMALNFCEEN SIPVVVFNFL EPGNITKALC GEQVGTLIDR TGRGVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-592885281239Uridylate kinase
3ek5_B3e-592885281239Uridylate kinase
3ek5_C3e-592885281239Uridylate kinase
3ek5_D3e-592885281239Uridylate kinase
3ek5_E3e-592885281239Uridylate kinase
3ek5_F3e-592885281239Uridylate kinase
3ek6_A3e-592885281239Uridylate kinase
3ek6_B3e-592885281239Uridylate kinase
3ek6_C3e-592885281239Uridylate kinase
3ek6_D3e-592885281239Uridylate kinase
3ek6_E3e-592885281239Uridylate kinase
3ek6_F3e-592885281239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407613.10.0uncharacterized protein LOC18023904 isoform X2
TrEMBLA0A087H8D30.0A0A087H8D3_ARAAL; Uncharacterized protein
STRINGA0A087H8D30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein