PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK38099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 48677.5 Da PI: 8.1612 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ KFK38099.1 51 DEPDCIYYLRTGVCGYGSRCRFNHPR 76 6899********************96 PP | |||||||
2 | zf-CCCH | 37.2 | 5.1e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ KFK38099.1 98 HPVCQHFMRTGTCKFGASCKYHHPR 122 789********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 143 | 167 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G +C+F+H+ KFK38099.1 143 GEKECSYYMRTGQCKFGLTCRFNHP 167 7899********************9 PP | |||||||
4 | zf-CCCH | 39.9 | 6.9e-13 | 300 | 324 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ KFK38099.1 300 DQPECQYFMRTGDCKFGSSCRYHHP 324 689*********************9 PP | |||||||
5 | zf-CCCH | 32.6 | 1.3e-10 | 346 | 371 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +fa+ G+Ck+G+ CkF H++ KFK38099.1 346 GVAQCTHFAQHGICKFGPACKFDHSM 371 6788********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.239 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 147 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 300 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 304 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 344 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 344 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-8 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 347 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 350 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MERYGRTGEE GSRSDPSSLE WTTGETGVEA SMWRLGLTGG GGGEVFPERP DEPDCIYYLR 60 TGVCGYGSRC RFNHPRDRGA VVGGVRGEAG ALPERMGHPV CQHFMRTGTC KFGASCKYHH 120 PRQGSGSVAP VSISYLGYPL RPGEKECSYY MRTGQCKFGL TCRFNHPVVQ GPPQQQQQQQ 180 PQPQPQLQTI YPTLQSQAVP SSQQYGLVLA RPSLLPGSYL QSHYGPQMVL PPGMVPYSGW 240 NPYQASISAM PSPGTQPSMG SSSVYGITPL SPSATAYTGT YQSGPSSNTP KEQSFPQRPD 300 QPECQYFMRT GDCKFGSSCR YHHPLDAVPP KTGIVLSSIG LPLRPGVAQC THFAQHGICK 360 FGPACKFDHS MSSSLSYSPS ASSLTDMPVA PYPIGSSSLS GALAPISSSN KPTTTEPAVT 420 ATVSSPMVSS LTRQEPAETS SDSASVSGSI EAKTSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK38099.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK230438 | 0.0 | AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407949.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q9SQU4 | 0.0 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A087H7J7 | 0.0 | A0A087H7J7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H7J7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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