PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37767.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 697aa    MW: 78301.6 Da    PI: 6.4188
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37767.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181468256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                r+ t++t++q+e Le++F+++++p++++r  L k+l+++ +q+k+WFqN+R++ k
  KFK37767.1 14 RRNTRHTRQQIEKLEAYFKECPHPDEARRHMLGKELNMEPDQIKFWFQNKRTQSK 68
                67799***********************************************988 PP
2START113.43.3e-362054282206
                 HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
       START   2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                 +a +a +el ++ + ee +Wv+ss       + e ++          +            ++e +++++vv+ ++++l e +ld+  +W+  ++    +
  KFK37767.1 205 IAASAIEELKRLFSIEEIFWVESSidgaymiDRESYEN---------FfhairhiksssARVESSKEFAVVPIEATNLIEMFLDSE-KWKDLFPtivtA 293
                 6788999999999999********77644443333333.........2333445566888**************************.***99999999* PP

                 EEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
       START  79 aetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                 a+t+  ++s+       +++q++  ++  lsplvp R+fv+vR++++ ++g w+i+dv ++++ ++   + ++ + ++pSg+li  ++ng skv w+eh
  KFK37767.1 294 AKTIPMLESDvpikencNVVQVIWEKMHILSPLVPpREFVIVRCCQEIEKGLWIIADVTISVNINKD--PFSAPCYKRPSGCLIGALPNGQSKVMWIEH 390
                 *********************************************************9988888874..67777888********************** PP

                 EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                 v+++++++    +r ++  +   gak+w atl+r ce+
  KFK37767.1 391 VEVDDKSItNHTYREVLFGRSGYGAKRWIATLERMCER 428
                 ********8889************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-17570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-20774IPR009057Homeodomain-like
PROSITE profilePS5007116.7631070IPR001356Homeobox domain
SMARTSM003894.5E-161274IPR001356Homeobox domain
CDDcd000868.04E-171470No hitNo description
PfamPF000463.6E-161468IPR001356Homeobox domain
PROSITE profilePS5084837.468195431IPR002913START domain
SuperFamilySSF559618.1E-21198428No hitNo description
CDDcd088757.26E-79204427No hitNo description
SMARTSM002346.4E-20204428IPR002913START domain
PfamPF018522.8E-30205428IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-5261394IPR023393START-like domain
SuperFamilySSF559611.37E-7452667No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MEYDGSGSSG NEERRNTRHT RQQIEKLEAY FKECPHPDEA RRHMLGKELN MEPDQIKFWF  60
QNKRTQSKAQ DERSANILLR GENDRLQTAN AAILEALKNV VCPPCGGPPL GKEERERSVQ  120
KLRLENIRLK KLREQLTKTL SKSKLKGPTM VDSLASAHRQ QIFDTCFSYE ANQNILVYRP  180
NSSGPVTSQT VQPEYHIDIT QVPEIAASAI EELKRLFSIE EIFWVESSID GAYMIDRESY  240
ENFFHAIRHI KSSSARVESS KEFAVVPIEA TNLIEMFLDS EKWKDLFPTI VTAAKTIPML  300
ESDVPIKENC NVVQVIWEKM HILSPLVPPR EFVIVRCCQE IEKGLWIIAD VTISVNINKD  360
PFSAPCYKRP SGCLIGALPN GQSKVMWIEH VEVDDKSITN HTYREVLFGR SGYGAKRWIA  420
TLERMCERMA LSSVLTIPST DWSEDTMIAR GRRKVMKLGE RVLNLYNEML TMSGKVEFPQ  480
GLNGGIRVSM RMNREEGQPP GYVISAATSI SVSLAPMQVF NILTDNDTRH QWDILCHNHP  540
VYEIASFSTG SNEANRVSIL KPTLGVDMGS LTMAQNSDKD AMYMIQDCYM DALGGMIVYA  600
PLDRNTLELA VADHIDPFMI PVLPSGFLIS NDGRRSTVAT DAEDGGGGSL ITVVFQILVA  660
GPKSPRPSEK SVDAVSTLIS DTVQKVRALL HNNPPHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450457GRRKVMKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408322.10.0homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A087H6L50.0A0A087H6L5_ARAAL; Uncharacterized protein
STRINGA0A087H6L50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8