PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37474.1
Common NameSPL1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SBP
Protein Properties Length: 930aa    MW: 103373 Da    PI: 5.3638
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37474.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22.1e-42137214178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cqve+Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  KFK37474.1 137 VCQVENCEADLSKVKDYHRRHKVCEMHSKATSAVVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 214
                 6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-34131199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.693135212IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-39136216IPR004333Transcription factor, SBP-box
PfamPF031107.7E-31138211IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.18E-7720821IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-7720821IPR020683Ankyrin repeat-containing domain
CDDcd002047.33E-9722818No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MEAIIEGESQ HFYGFRGMDL GKKSVEWDLN DWKWDGNLFV ATQLNPSRGG GSETTMGRQF  60
FPVGNSSNSS SSCSDEGNNN TRAVEKKRRA VVIEEDCNNG NGGGGLSLKL GDNGCDVNGV  120
AAKKTKFGGG GVTNRAVCQV ENCEADLSKV KDYHRRHKVC EMHSKATSAV VGGIMQRFCQ  180
QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTNPEPGANG NPPSDDQSSN YLLISLLKIL  240
SNMHSDRSDH TGDQDLMSHL LKSLVSHAGE QLGKNLVELL LQGGSQASLN IQNLLAIERA  300
PQEDLKQLSV NVPEITQQEV YANGTASENR TEKQVKVNDF DLNDIYIDSD DGTDIERSPP  360
LTNPASSSLD YPSWVHQSSP PQTSRNSDSA SDQSPSSSSE DAQMRTGRIV FKLFGKEPND  420
FPVDLRGQIL DWLSHSPSDM ESYIRPGCIV LTIYLRQAEN AWEELSDDLG FSLGKFLDRS  480
DDPLWTTGWI FVRVQNQLAF VFNREVVVDT SLALRSRDHS DIISVRPLAV VATRKAQFAV  540
KGINLRRPGT RLLCAVEGKY LIQETTNDST TEENDDAKEK TEIVECVNVS CALPIASGRG  600
FIEIEDQGLS SSFFPFIVVE EDDVCSEIRV LETTLEFTGT DSAKQAMEFI HEIGWLLHRS  660
KLGESDPNPD GFPLARFKWL IEFSMDREWC AVIRKLLNMF FEGAVGDDSS SSDAALSELC  720
LLHRAVRKNS KPMVEMLLRY IPKQQRHSVF RPDADGPAGL TPLHIAAGKD GSEDVLDALT  780
EDPETVGIEA WKSSRDSTGF TPEDYARLRG HFSYIHLIQR KINKNSTTED HVVVNIPACF  840
SDREQKEPKS SPIASALEIT TQTNPLQCKL CDHKLVYGTT RRSVAYRPAM LSMVAIAAVC  900
VCVALLFKSC PEVLYVFQPF RWELLDYGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-32128211184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37474.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639628.10.0squamosa promoter-binding-like protein 1
RefseqXP_023639629.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLS4WZU40.0S4WZU4_ARAAL; SQUAMOSA promoter binding protein-like protein 1
STRINGS4WZU40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Bergonzi S, et al.
    Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina.
    Science, 2013. 340(6136): p. 1094-7
    [PMID:23723236]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]