PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37365.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 753aa    MW: 82929.2 Da    PI: 6.6022
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37365.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-1977132156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe++F++ ++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  KFK37365.1  77 KKRYHRHTPQQIQELESVFKEWPHPDEKQRLDLSHRLNLDSRQVKFWFQNRRTQMK 132
                 688999***********************************************999 PP
2START188.73.1e-592735001206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++el+k+a+ ++p+W +ss    e +n++e+ ++f++  +     + +ea++++gvv+ ++  lve+l+d+  +W e+++    k +t+e+is
  KFK37365.1 273 ELALSAMDELMKMAQTSKPLWISSSkgkrETLNREEYERSFTRCVGpkpdgFVSEASKEVGVVIINSLALVETLMDSE-RWAEMFPcmiaKYSTIETIS 370
                 57899********************998888888888888866444999999**************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                 sg      gal lm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvds +++       ++  +++lpSg+l+++++ng+skvtw++h++++++
  KFK37365.1 371 SGmggtrnGALLLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDSINDQGGsasVGPSLSCRRLPSGCLVQDMPNGYSKVTWIDHTEYDEA 469
                 ****************************************************99988763333345789****************************** PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                 ++h l+r+lv+sgla+g+k+w ++lqrqce+
  KFK37365.1 470 SIHHLYRPLVSSGLAFGFKRWISALQRQCES 500
                 *****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-2151135IPR009057Homeodomain-like
SuperFamilySSF466893.59E-2063134IPR009057Homeodomain-like
PROSITE profilePS5007117.274134IPR001356Homeobox domain
SMARTSM003892.9E-1675138IPR001356Homeobox domain
PfamPF000462.5E-1777132IPR001356Homeobox domain
CDDcd000864.86E-1877134No hitNo description
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PROSITE profilePS5084843.201264503IPR002913START domain
SuperFamilySSF559611.51E-32266500No hitNo description
CDDcd088753.47E-116268499No hitNo description
PfamPF018521.9E-51273500IPR002913START domain
SMARTSM002342.0E-48273500IPR002913START domain
SuperFamilySSF559611.14E-19528745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MNFSGFLHHD DGKSSGAAAM SGGLVKPVFS SPRLSLGLQT NIDVSVGRRS PESRSGSDNN  60
ADANSGDDDL DGPLKKKKRY HRHTPQQIQE LESVFKEWPH PDEKQRLDLS HRLNLDSRQV  120
KFWFQNRRTQ MKTQIERHEN SLLRQENDKL RAENMSVREA MSNPMCGHCG GSAVLGEISL  180
EEHHLRIENS RLKDELDRIC ALAGKFLNRS NDVTGSLKLG VSGGYSGGFT LVPHGFEITS  240
TPFYSGLVAT PVNRTGTDVV SSTGLEQKSL YLELALSAMD ELMKMAQTSK PLWISSSKGK  300
RETLNREEYE RSFTRCVGPK PDGFVSEASK EVGVVIINSL ALVETLMDSE RWAEMFPCMI  360
AKYSTIETIS SGMGGTRNGA LLLMQAELQL LSPLVPVRQV TFLRFCKQHA EGVWAVVDVS  420
VDSINDQGGS ASVGPSLSCR RLPSGCLVQD MPNGYSKVTW IDHTEYDEAS IHHLYRPLVS  480
SGLAFGFKRW ISALQRQCES LTILMSSTIP NRDKPNPISS IGKKSMLKLA QRMTENFCSG  540
ICASSSQKWT KLEVENIDEN VRIMTRKNVD GSGEPPGILL SAATSVWVPV SPRRLFDFLR  600
DELMRSEWDI LSNGGPMHEI AQIFKGQDHS NSVSLLRSTA MNENQSSMLI LQETSIDASG  660
AIVVYAPVDI PAMHSVMNGA DSTYVALLPS GFAVLPDGQG IEEEETGSLL TVAFQILVNS  720
LPTAKLNVES IETVNNLISC TVQKIRAALR CDK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37365.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293718.10.0homeobox-leucine zipper protein HDG1 isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A087H5G30.0A0A087H5G3_ARAAL; Uncharacterized protein
STRINGA0A087H5G30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]