PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37304.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 262aa    MW: 30379 Da    PI: 6.4307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37304.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC  C ksF +   L  H+++H
  KFK37304.1  4 YKCRVCFKSFINERALDGHMKSH 26
                9********************99 PP
2zf-C2H214.20.00013153175123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC+ C+k+F++   L  H  +H
  KFK37304.1 153 FKCETCNKVFKSYQALGGHRASH 175
                 89***********9999998887 PP
3zf-C2H213.30.00025199221123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++Fs+   L  H r+H
  KFK37304.1 199 HQCPICFRVFSSGQALGGHKRSH 221
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-8326No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0021426IPR015880Zinc finger, C2H2-like
PfamPF138944.0E-4426No hitNo description
PROSITE profilePS5015710.221426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-8148175No hitNo description
PfamPF139129.8E-12152177IPR007087Zinc finger, C2H2
SMARTSM003550.018153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SuperFamilySSF576675.45E-5195224No hitNo description
SMARTSM003550.081199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076199226IPR007087Zinc finger, C2H2
PfamPF139121.7E-10199221IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEKYKCRVCF KSFINERALD GHMKSHMLNL EEQEKPSQLS NYVTESDTSS SSSDQEQEFD  60
FAEEEESETE SLITRKRSKR TRKLGSFDFD FKKLKGESVT ELEQHHSSAS DTTTEEDLAF  120
CLIMLSRDKW KKNKKTMIKQ DFEEEPSKIR GRFKCETCNK VFKSYQALGG HRASHKKNNK  180
TTKTEEVVII EEEKKKKIHQ CPICFRVFSS GQALGGHKRS HGSNRGGFMS NEEVEVKEKM  240
IDLNLPASNE EDDETSLVFD EW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474803.11e-100PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD05e-92ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A087H5A20.0A0A087H5A2_ARAAL; Uncharacterized protein
STRINGA0A087H5A20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-72C2H2-like zinc finger protein