PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37275.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 345aa MW: 38489.7 Da PI: 9.082

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37275.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67	3.8e-21	55	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+ +e+ aLi+a+re++ +l+rg+lk+++Weev++ + ++++++qC++k+e+l+kry+ + +++++ ++ s++++f+++e KFK37275.1 55 CWSLEETIALIDAYREKWLALNRGNLKANHWEEVAESVsancPNVTLKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFMSSWVHFKRME 145 7******************************9999977779999************************9779999*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0085	52	118	IPR001005	SANT/Myb domain
Pfam	PF13837	1.6E-20	54	147	No hit	No description
PROSITE profile	PS50090	6.26	56	116	IPR017877	Myb-like domain
SMART	SM00595	3.1E-10	63	152	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSDPDSPMNH DPIPDPIPDP DPNQIQPPPP ASVTDLTIAS IPPPSKASRR LPPPCWSLEE 60 TIALIDAYRE KWLALNRGNL KANHWEEVAE SVSANCPNVT LKKTAVQCRH KMEKLRKRYR 120 TEIQRARSVP VARFMSSWVH FKRMESMEIR VETKLSKYSE EEEEEEDGNY AARFRGGGSV 180 AARTTTPRFF NRNGSVGSGS SSGGIRIRIP TGVSIAQPGP RFPGKIDQKY TANSSSIPAR 240 VSNFGGGKRG REMEEEEAEE DDPMVAIASA IKLLGDTLVR TENTKMEMTK EIEAMRMDME 300 MKRTKMILES QQRIVEAFAK SLSENAEKKK ARRVSSLATS LATDS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSDPDSPMNH DPIPDPIPDP DPNQIQPPPP ASVTDLTIAS IPPPSKASRR LPPPCWSLEE  60
TIALIDAYRE KWLALNRGNL KANHWEEVAE SVSANCPNVT LKKTAVQCRH KMEKLRKRYR  120
TEIQRARSVP VARFMSSWVH FKRMESMEIR VETKLSKYSE EEEEEEDGNY AARFRGGGSV  180
AARTTTPRFF NRNGSVGSGS SSGGIRIRIP TGVSIAQPGP RFPGKIDQKY TANSSSIPAR  240
VSNFGGGKRG REMEEEEAEE DDPMVAIASA IKLLGDTLVR TENTKMEMTK EIEAMRMDME  300
MKRTKMILES QQRIVEAFAK SLSENAEKKK ARRVSSLATS LATDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37275.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397652.1	1e-163	trihelix transcription factor ASIL2
TrEMBL	A0A087H573	0.0	A0A087H573_ARAAL; Uncharacterized protein
STRING	A0A087H573	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-150	Trihelix family protein