PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37232.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 286aa    MW: 32946.1 Da    PI: 10.3281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37232.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66e-1519112199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffk+l  +d  ++++  +p kf ++  ++   + +++l+  +grsW+v l  +  +g+y+++ kGW++F ++n+L +++f++F+ +g+++    v++f+
  KFK37232.1  19 FFKILAYEDLWSESMRFIPHKFKTSVCKN--HPLKVILKVVWGRSWTVSL--SSFKGSYLMEkKGWEKFLNDNKLGDKEFLTFTNEGNNCL--SVSIFK 111
                 899999999999**********8888555..4568***************..666666555449********************6666666..999998 PP

                 S CS
          B3  99 k 99 
                 k
  KFK37232.1 112 K 112
                 7 PP
2B3491.1e-152072801796
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +p +fa++h+ +  e+++ ++ d++g+ W+v +    + g+ ++++GW+  ++  gL +gDf++F+l++r+  e+v+ v
  KFK37232.1 207 AIPQDFANDHMPN--ETTKFIIHDPNGKPWDVVY--YYTEGQKLFSSGWRILARKYGLAVGDFCTFRLIKRR--EMVLEV 280
                 69*****999855..6679***************..66777789***********************99753..345555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-1913114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-1715113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-1318111No hitNo description
PROSITE profilePS5086312.84419113IPR003340B3 DNA binding domain
PfamPF023625.3E-1319112IPR003340B3 DNA binding domain
SMARTSM010191.4E-1619113IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-20188282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19188283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.957191284IPR003340B3 DNA binding domain
SMARTSM010193.1E-12194284IPR003340B3 DNA binding domain
PfamPF023623.4E-13207279IPR003340B3 DNA binding domain
CDDcd100171.71E-13208280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAKNRAFGSI QQDKDKASFF KILAYEDLWS ESMRFIPHKF KTSVCKNHPL KVILKVVWGR  60
SWTVSLSSFK GSYLMEKKGW EKFLNDNKLG DKEFLTFTNE GNNCLSVSIF KKNCKEMLTP  120
RKTTIISSSS SFSNVKKEEM SDVSPIIAEG SRRGRKEKKE RADEEEARKK SKKMKKKADN  180
NNVYEASSSL VPTFSFTIKP SKLIVAAIPQ DFANDHMPNE TTKFIIHDPN GKPWDVVYYY  240
TEGQKLFSSG WRILARKYGL AVGDFCTFRL IKRREMVLEV IHASQM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273RLIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010696.11e-118B3 domain-containing protein At5g18090
TrEMBLA0A087H5300.0A0A087H530_ARAAL; Uncharacterized protein
STRINGA0A087H5300.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.13e-64VERDANDI