PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37037.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 259aa    MW: 29703.6 Da    PI: 7.9037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37037.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05101123123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C + F+++  L  H++ H
  KFK37037.1 101 FECHYCFRNFPTSQALGGHQNAH 123
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-597129No hitNo description
PfamPF139122.0E-5100125IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDETSGRRET HDFMNVNVES FSQLPFIRRT PPVKEKSSII RLFGQELVGD NSSSGTLQQQ  60
QQEDMSVDSS EIITTTTKQE ESSENVKEKD KDKDNNNNRR FECHYCFRNF PTSQALGGHQ  120
NAHKRERQHA KRGSMTSYLH HHHPDSHHNV YGFLNNHRHY PTWTSEPRYY GGVGGGQHQT  180
ASYYSRTLPP PSNSPTIIGS PLGMWRVPPS TSSNAIQGVY SASSTFRTHE QEIKEPNWPY  240
NRLMKPNNVQ DHVSLDLHL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37037.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. {ECO:0000269|PubMed:17507408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633929.11e-123PREDICTED: zinc finger protein 8-like
SwissprotP937511e-114ZFP8_ARATH; Zinc finger protein 8
TrEMBLA0A087H4I50.0A0A087H4I5_ARAAL; Uncharacterized protein
STRINGA0A087H4I50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-112zinc finger protein 8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]
  4. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]