PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK36932.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bZIP

Protein Properties

Length: 372aa MW: 41281.4 Da PI: 6.6161

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK36932.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	150	207	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se KFK36932.1 150 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 207 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-17	146	210	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.2E-8	148	203	No hit	No description
PROSITE profile	PS50217	10.622	148	211	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.04E-10	150	201	No hit	No description
Pfam	PF00170	1.7E-9	150	208	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.40E-22	151	200	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEDASNAKPN QQCPPLSNQT TLAPNPSPFR GPYHRRAHSE VQFRLPEDLD LSEPFSGFDE 60 LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS AENGGGEAAN SRPRHRHSLS 120 VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV 180 QTLQTEATTL SAQLSLFQRD TTGLSSENTE LKLRLQVMEQ QAKLRDALND QLKKEVERLK 240 FATGEVSPAD AYNLGMAHMQ YSHQQPQQSF FQHHQQQTDA QNLQQMTHQF HLFQPNNNQN 300 QNMTSPSSRP NPPTAHQLMH HATSNNSAQS HSFSEAMHED HLGRLQGLDI SSCGRGSNFG 360 RSDTVSESSS TM

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEDASNAKPN QQCPPLSNQT TLAPNPSPFR GPYHRRAHSE VQFRLPEDLD LSEPFSGFDE  60
LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS AENGGGEAAN SRPRHRHSLS  120
VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV  180
QTLQTEATTL SAQLSLFQRD TTGLSSENTE LKLRLQVMEQ QAKLRDALND QLKKEVERLK  240
FATGEVSPAD AYNLGMAHMQ YSHQQPQQSF FQHHQQQTDA QNLQQMTHQF HLFQPNNNQN  300
QNMTSPSSRP NPPTAHQLMH HATSNNSAQS HSFSEAMHED HLGRLQGLDI SSCGRGSNFG  360
RSDTVSESSS TM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK36932.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	0.0	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	0.0	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	0.0	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_181594.1	0.0	Basic-leucine zipper (bZIP) transcription factor family protein
Swissprot	O22873	0.0	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A087H480	0.0	A0A087H480_ARAAL; Uncharacterized protein
STRING	A0A087H480	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]