PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36916.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 403aa    MW: 45099.8 Da    PI: 8.0526
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36916.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like993.3e-3184137255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtpeLH +F++ave+LGG+++AtPk +l++m+vkgL+++hvkSHLQ++R+
  KFK36916.1  84 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQMMNVKGLSIAHVKSHLQMFRS 137
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2980138IPR009057Homeodomain-like
PROSITE profilePS5129412.42880140IPR017930Myb domain
SuperFamilySSF466899.85E-1681139IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2384139IPR006447Myb domain, plants
PfamPF002493.1E-985135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MRSSSKSSEN SKACPSNNFK ATTNKEEDKD EENDDEEEEE EERTGDQSPS SNSYVEESGS  60
HNNHNDQIKK NGGSVRPYNR SKTPRLRWTP ELHLCFLQAV ERLGGPDRAT PKLVLQMMNV  120
KGLSIAHVKS HLQMFRSKKT DDPSQGDQGF SFEHGTGYTY NLSQLPMLQS FDQRPSTSLG  180
YGGGSWTDHR RQIYRSPWRG LVARDNTRTR QTLFSSQPGD RFHGVNNNIL DDKNKTISFR  240
INSHEAAHEN NGVAGAVPRI HSSFLEGMKT LNKSWGQSLS SSLPNSSSAI RPQDQIATTF  300
SSYQRNNAQV VEGSENVLKR KILLLSDDCI KSDQDLDLSL SLKVPRTHDN LGECLLEGEG  360
KEHEDSKGLS LSLSSSKLGR TIRKEDHKKR KISVLASPLD LTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1785139357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545951e-164AC254595.1 Capsella rubella clone CAP16-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881704.10.0uncharacterized protein LOC9315925
TrEMBLA0A087H4640.0A0A087H464_ARAAL; Uncharacterized protein
STRINGA0A087H4640.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein