PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Protein Properties

Length: 249aa MW: 29168.1 Da PI: 6.7953

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK36503.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.7	4e-32	39	144	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k ltpsdv+k++rlv+pk++ae++ e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F++++ +++++ KFK36503.1 39 FEKPLTPSDVGKLNRLVIPKQHAERYfplaxxxXDTVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVILFHRHRGDGGRF 137 99****************************944456889*********************************************887799999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ KFK36503.1 138 FIGWRRR 144 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.1E-40	33	152	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-31	36	145	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.08E-28	38	143	No hit	No description
SMART	SM01019	3.0E-24	39	145	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-29	39	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.269	39	145	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSINQYSSDF HYHSLMWQQQ QQQQQYHQND VVEEKEALFE KPLTPSDVGK LNRLVIPKQH 60 AERYFPLAXX XXDTVEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKHLD 120 AGDVILFHRH RGDGGRFFIG WRRRGDSSSS SDSYRHLQSN ASLQYNYPHA GTQAVESQRG 180 NSKTLRLFGV NMECQLDSDW SEPSTPDGST TCPTNHDQFH FYPQQHYPPQ YYMDISFTGD 240 MNQARSPQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-49	32	144	1	113	B3 domain-containing transcription factor NGA1
5os9_B	8e-49	32	144	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK36503.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117587	0.0	AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143617.1	1e-152	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	1e-150	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A087H301	0.0	A0A087H301_ARAAL; Uncharacterized protein
STRING	A0A087H301	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-121	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]