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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK36384.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | WRKY | ||||||||
Protein Properties | Length: 415aa MW: 44977.4 Da PI: 6.0518 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.5e-31 | 220 | 278 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ KFK36384.1 220 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 278 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-31 | 213 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 214 | 280 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 217 | 280 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 219 | 279 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-26 | 221 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MDNFQGDLTD VVRGIGSGQV STSPGPPEGP PPAPRTSDLQ VDLPSATAPS CHTNPFGDPF 60 VSMTDPLLRL TANSGYFSGA GDENKSNNSF AIFPKVFDND HIKGQCSVFP RIRISQSNII 120 HDDSTCNSPA MGTQGTTAAV SAAAVASPWG MINVDTTNSP RNCLLVDNSN NTLSSSQIQI 180 SSSSPRNLGI KRRKSQAKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR 240 GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSTSSPSSNP 300 SSKSATASSK VSQKNNKTHL PSSSTHPPHY TVKEEDMEER QDNMEFDKDF DDTYRPELFQ 360 HQPEDFFADL DELEGDSLTM LLSQGFAGDS SGGGSLENKN VFSDFFDDDD SSRSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-26 | 194 | 281 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 9e-26 | 194 | 281 | 2 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK36384.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF404863 | 0.0 | AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds. | |||
GenBank | BT029239 | 0.0 | BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504968.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 | ||||
Swissprot | O64747 | 0.0 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A087H2N2 | 0.0 | A0A087H2N2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H2N2 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 0.0 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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