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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK36245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | G2-like | ||||||||
Protein Properties | Length: 104aa MW: 12623.7 Da PI: 10.402 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.8 | 3.2e-25 | 4 | 55 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rW+ +LH+ Fv++veqLGG++kAtPk i elm+ Ltle++kSHLQ YR+ KFK36245.1 4 IRWNDDLHRLFVHVVEQLGGEQKATPKPIFELMNRGELTLEQIKSHLQWYRI 55 79*************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-14 | 4 | 59 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-21 | 4 | 56 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 4 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MMSIRWNDDL HRLFVHVVEQ LGGEQKATPK PIFELMNRGE LTLEQIKSHL QWYRITKQKE 60 AITNKRQENI IKQQMIQWET HQHLRLSERL LKTAELIQNQ QRLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK36245.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q0J235 | 3e-14 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A087H293 | 1e-68 | A0A087H293_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H293 | 2e-69 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 1e-20 | G2-like family protein |