PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

SBP

Protein Properties

Length: 181aa MW: 20864.3 Da PI: 10.2741

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK35743.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.6	6.4e-42	57	133	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dl+eak+yhrrhkvCevh+ka+ v++sg++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+++ KFK35743.1 57 CQVDRCTSDLKEAKQYHRRHKVCEVHAKASYVFLSGINQRFCQQCSRFHELLEFDEAKRSCRRRLAGHNERRRKSSS 133 **************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.6E-33	50	118	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.077	54	131	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-38	56	135	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-31	57	130	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEGKRTTQGQ GYMKNKASVS YLVEEEMEND IDGEEEEKRN RVNKGYSGNT GGSSRLCQVD 60 RCTSDLKEAK QYHRRHKVCE VHAKASYVFL SGINQRFCQQ CSRFHELLEF DEAKRSCRRR 120 LAGHNERRRK SSSESFGEGS SSGRRGIIGQ VIQNQERSRM IRVRSVTNPK AQETNRKPRS 180 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-46	45	130	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16914499}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK35743.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040, ECO:0000305\|PubMed:16914499}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC815951	1e-173	KC815951.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 4 (SPL4) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013646322.1	3e-92	squamosa promoter-binding-like protein 4
Refseq	XP_013752440.1	3e-92	squamosa promoter-binding-like protein 4
Swissprot	Q9S7A9	1e-67	SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBL	S4WUK1	1e-129	S4WUK1_ARAAL; SQUAMOSA promoter binding protein-like protein 4
STRING	S4WUK1	1e-130	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	1e-56	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Bergonzi S, et al. Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina. Science, 2013. 340(6136): p. 1094-7 [PMID:23723236] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Hyun Y, et al. Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. Planta, 2015. 241(1): p. 271-84 [PMID:25269397] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Ioannidi E, et al. Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol. Biol., 2016. 92(6): p. 675-687 [PMID:27631431] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142]