PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35714.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 303aa    MW: 35043 Da    PI: 10.0495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35714.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-1132132395
                 EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 k+lt  d +k+ rl++pk+ +e+            +++  ++++++++de+   + v+li   +sg y+++++W + vk++g k +D ++F  d+ s++
  KFK35714.1  32 KKLTWTDIGKNVRLYIPKNAFEQLiipelpwelveNLV--NGVEVMIKDERDIAYHVTLIKFIRSGDYYFKNNWIKIVKDKGYKINDEITFWWDS-STG 127
                 88999999*************99999999996643333..899******************99*****************************654.666 PP

                 ..EEE CS
          B3  91 elvvk 95 
                 +++++
  KFK35714.1 128 NFYLM 132
                 55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-1327135IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006330137IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-1630134IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-1231129No hitNo description
PfamPF023621.2E-832133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAQNINLELT LGTNVSNLEL SLRRNVSRVV KKKLTWTDIG KNVRLYIPKN AFEQLIIPEL  60
PWELVENLVN GVEVMIKDER DIAYHVTLIK FIRSGDYYFK NNWIKIVKDK GYKINDEITF  120
WWDSSTGNFY LMRCNHISTN APDPIKTSQL SGPGESSTKM GGPLGKSFTS SWSEHIAEAA  180
RKGGNGEVEL DWDSYERAKQ EILSDKARTK EETKMRAAEE AAQAKTEKMK RVAERKNEHE  240
ERDQRERKIR KPKQKKDNAT IASRSKLKKR LTKVKQNYFL HFFDKTRNSL DDCSTPLSIC  300
LPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249256RKPKQKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087H0R20.0A0A087H0R2_ARAAL; Uncharacterized protein
STRINGA0A087H0R20.0(Arabis alpina)