PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35572.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 857aa    MW: 94299.4 Da    PI: 4.7862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35572.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.93e-11172193223
                 --SS-EEEEEEE--TT-SS-EE CS
        WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                 dDg++WrKYGqK+vkg+++prs
  KFK35572.1 172 DDGFRWRKYGQKVVKGNPNPRS 193
                 8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-12156193IPR003657WRKY domain
SuperFamilySSF1182902.88E-8165193IPR003657WRKY domain
PROSITE profilePS5081115.101166193IPR003657WRKY domain
SMARTSM007747.4E-5171206IPR003657WRKY domain
PfamPF031067.3E-7172193IPR003657WRKY domain
Gene3DG3DSA:3.80.10.103.6E-16264536IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006461.1E-4265292IPR001810F-box domain
SuperFamilySSF520474.0E-13279596No hitNo description
SMARTSM00367180345370IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF520472.55E-33549818No hitNo description
Gene3DG3DSA:3.80.10.105.7E-38558815IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003670.74560585IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367240586611IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.83637662IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.018663683IPR001611Leucine-rich repeat
SMARTSM0036745663686IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003677.9687712IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036711717742IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003674.7E-5743768IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367140776801IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MVESGGEGNA TTMIPDNGLT HHEPVNADLP PPSQEGHVDI PTEESVNIPS HQSHVEPLDA  60
PIVPSLESEV VDHANSTNII SIDEESDERE DDDKDKDEDY YEEEEVEDNG EDEDEELEVE  120
KDEDMVAKQD VVQPPSPKRR RYETPTNMIG SIRTSKQQRV IIQMESDEDL PDDGFRWRKY  180
GQKVVKGNPN PRSPSSVDMT PPFTSLAPPM DMTQLYMTGL SMLPSLPVNN QNTSFMYQND  240
APRMDASPND MGVYKGIMDR LFVGIAEEIL KRLDLENLCS VACVSTTLRS AVVSGVLPSL  300
TSLDLSVFSP EEETLNHVLR GCIGVKSLTL NCLRLNSVAV CGVLGSHLQE LHLLRCSLLN  360
SSVLTSIGSL CPNLRVLTLE MADLDSPIVF QSNLTQLLNG CPYLESLQLN IRGILVDATA  420
FQSIRFSLPE TLKVLRLQPL LESEAILLMN RFKVTGSYLS TALSPSPSFT LQSLSLVLDL  480
ISDRLIIAIT GSLPLLVKLD LEDRPEKEPY PDSDLTYTGL QSLGYCQQLT SLSLVRTCYN  540
RKISFKRIND MGIFLLSEAC KGLESVRLGG FPKVSDAGFA SLLHSCRNLK KFEVRGAFLL  600
SDLAFHDVTG SSCSLQEVRL STCPLITSEA VKKLVLCSNL ELLDLGSCKS ISDSCLNSVS  660
ALRKLTSLNL AGADVTDTGM LALGKSNVPI TQLSLRGCKR VSDRGILYLL SNEGTISRTL  720
STLDLGHMPG ISDRAIHAIT RYCKALTELS IRSCFHVTDS SIESLATRER QAEGGGKQLR  780
KLNVHNCVSL TTGALRWLSK PSFAGLHWLG VGQTRFAGRK ESVTATICEQ RPWLTLCFDG  840
CELGCYDGWE FHTPQRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6o60_C6e-1153079873363F-box/LRR-repeat protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3033490.0AJ303349.1 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480100.10.0PREDICTED: F-box protein At-B isoform X2
RefseqXP_010480101.10.0PREDICTED: F-box protein At-B isoform X3
RefseqXP_019095325.10.0PREDICTED: F-box protein At-B isoform X1
SwissprotQ9ZWC60.0ATB_ARATH; F-box protein At-B
TrEMBLA0A087H0C00.0A0A087H0C0_ARAAL; Uncharacterized protein
STRINGA0A087H0C00.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.14e-21WRKY DNA-binding protein 10