PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK35571.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 38618.5 Da PI: 4.3328 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.3e-31 | 181 | 238 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK+vkg+++prsYY+Ct++gC+vkk ver a+d ++v++tY g+H+h+ KFK35571.1 181 DDGFRWRKYGQKVVKGNPNPRSYYKCTYEGCNVKKFVERGADDINIVVTTYDGRHQHN 238 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-32 | 165 | 239 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-27 | 174 | 238 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.79 | 175 | 240 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-35 | 180 | 239 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-24 | 181 | 237 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MNIPSPVANN EPQDMVESGG EGNATIMIPD NNLTHHEPMN VDLPPLPQEG PVAIPMEESV 60 YIPSHEXXXX XXXXXSLESE VVDHANSINI ISIESDESED DDKDKDEDYY EEDEDEDEDH 120 GKDEELEVEK DEDMVAKQDV LRPPSPKRRR YETPTNMIGS IRASKQQRVI IQMESEEDFP 180 DDGFRWRKYG QKVVKGNPNP RSYYKCTYEG CNVKKFVERG ADDINIVVTT YDGRHQHNSL 240 VPRSKKQSGP SMPSQAVQTN QTTQLSMPPS AVDMTTPFTS LAPQMDMTQL YMTGLSKLPS 300 LPVNNQNTSF LYQNDAPRVD ATPATGVYKG IMKRMFGGIG GRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 171 | 238 | 8 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 171 | 238 | 8 | 75 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK35571.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894513.1 | 2e-87 | probable WRKY transcription factor 10 | ||||
TrEMBL | A0A087H0B9 | 0.0 | A0A087H0B9_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H0B9 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10299 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55600.1 | 4e-67 | WRKY DNA-binding protein 10 |