PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35571.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 343aa    MW: 38618.5 Da    PI: 4.3328
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35571.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31181238259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYGqK+vkg+++prsYY+Ct++gC+vkk ver a+d ++v++tY g+H+h+
  KFK35571.1 181 DDGFRWRKYGQKVVKGNPNPRSYYKCTYEGCNVKKFVERGADDINIVVTTYDGRHQHN 238
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-32165239IPR003657WRKY domain
SuperFamilySSF1182909.29E-27174238IPR003657WRKY domain
PROSITE profilePS5081130.79175240IPR003657WRKY domain
SMARTSM007744.5E-35180239IPR003657WRKY domain
PfamPF031064.9E-24181237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNIPSPVANN EPQDMVESGG EGNATIMIPD NNLTHHEPMN VDLPPLPQEG PVAIPMEESV  60
YIPSHEXXXX XXXXXSLESE VVDHANSINI ISIESDESED DDKDKDEDYY EEDEDEDEDH  120
GKDEELEVEK DEDMVAKQDV LRPPSPKRRR YETPTNMIGS IRASKQQRVI IQMESEEDFP  180
DDGFRWRKYG QKVVKGNPNP RSYYKCTYEG CNVKKFVERG ADDINIVVTT YDGRHQHNSL  240
VPRSKKQSGP SMPSQAVQTN QTTQLSMPPS AVDMTTPFTS LAPQMDMTQL YMTGLSKLPS  300
LPVNNQNTSF LYQNDAPRVD ATPATGVYKG IMKRMFGGIG GRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25171238875Probable WRKY transcription factor 4
2lex_A3e-25171238875Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894513.12e-87probable WRKY transcription factor 10
TrEMBLA0A087H0B90.0A0A087H0B9_ARAAL; Uncharacterized protein
STRINGA0A087H0B90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102991733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.14e-67WRKY DNA-binding protein 10