PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35490.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 288aa    MW: 33506.8 Da    PI: 6.8159
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35490.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.95.6e-32281362103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkgkk 91 
                   Fl+k+ye+++d+++++++sw++ g sfvv+d++ ++ ++Lp yFkh+nf+SFvRQLn+Y +  ++ +++++ +       + + weF ++ F  g++
    KFK35490.1  28 FLTKTYEMVDDPNTNHIVSWNRGGISFVVWDPHILSATILPLYFKHNNFSSFVRQLNTYFWMTSTLRSASNYRkrgfrkvEAERWEFMNEGFLMGQR 124
                   9**********************************************************99888777766555566665449*************** PP

                   XXXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkkse 103
                   +ll++ikr++++
    KFK35490.1 125 DLLKSIKRRTTT 136
                   *********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3324133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-4424133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.5E-3024133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.7E-2828133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-152851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-156678IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-157991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDASSSSRAR SMPPVPMEGL QEPGPSPFLT KTYEMVDDPN TNHIVSWNRG GISFVVWDPH  60
ILSATILPLY FKHNNFSSFV RQLNTYFWMT STLRSASNYR KRGFRKVEAE RWEFMNEGFL  120
MGQRDLLKSI KRRTTTSSPP LLNQYDPSTE LRQDRDALLV EISRLREQEQ RARGYIQAME  180
QRINGAEKKQ RLMMSFLRQA VQNPSLLQQL FDKRKEHAMD RIQSSFVKHE AVEHVSELDA  240
LALEMQGYGR QRVDGNVERE LDDGFWEELL MINSEEEDAN VNVVPRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-222413813125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386486e-69AL138648.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2.
GenBankAL1638186e-69AL163818.1 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project).
GenBankCP0026866e-69CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ4467846e-69DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds.
GenBankDQ6531666e-69DQ653166.1 Arabidopsis thaliana clone 0000012913_0000009313 unknown mRNA.
GenBankJX1120286e-69JX112028.1 Arabidopsis thaliana truncated heat shock factor A7b mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413157.11e-150PREDICTED: heat stress transcription factor A-7b-like
SwissprotQ9M1V51e-140HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A087H0380.0A0A087H038_ARAAL; Uncharacterized protein
STRINGA0A087H0380.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-136HSF family protein