PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35314.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 762aa    MW: 84742 Da    PI: 7.0141
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35314.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.1e-20100155156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  KFK35314.1 100 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 155
                 688999***********************************************999 PP
2START184.26.8e-582804993206
                 HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 a+ a++elvk+a+++ep+Wv+s      +++n++e+ + f++  +     + +ea+++sg v+ ++  lve+l+d+  +W e+++    + +t+e iss
  KFK35314.1 280 ALVAMEELVKMAQSREPLWVRSLdsngfDMLNKEEYEKCFSRCVGlkqdgFVTEASKESGTVIINSLALVETLMDSE-RWAEMFPfmisRTSTTEIISS 377
                 6779*******************99***88888888888866444777889**************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh++++++ +h 
  KFK35314.1 378 GmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEHTEYDENRIHR 472
                 ********************************************************9.777766...******************************** PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 l+r+l++ gla+ga++w+a+lqrqce+
  KFK35314.1 473 LYRPLLSCGLAFGAQRWMAALQRQCEC 499
                 *************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-2086157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2087157IPR009057Homeodomain-like
PROSITE profilePS5007117.44397157IPR001356Homeobox domain
SMARTSM003891.9E-1898161IPR001356Homeobox domain
PfamPF000461.6E-17100155IPR001356Homeobox domain
CDDcd000866.10E-16104157No hitNo description
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
PROSITE profilePS5084840.604269502IPR002913START domain
SuperFamilySSF559613.98E-31272499No hitNo description
CDDcd088756.53E-108273498No hitNo description
SMARTSM002341.9E-40278499IPR002913START domain
PfamPF018524.1E-50280499IPR002913START domain
SuperFamilySSF559612.75E-17528757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MADSQFPKSM NFNGFLDSDV PYSNNNNFSF SAGTTTTRPF SSHGLSLGLQ TNVNVTRKSN  60
RGGDEEESRS ESDNNLEALS GDDLETDDNN NNNKPPRKKK KRYHRHTPKQ IQDLESVFKE  120
CAHPDEKQRL DLSRRLNLDP RQVKFWFQNR RTQMKTQIER HENALLRQEN DKLRAENLSV  180
RESMRNPMCG NCGGPAILGE ISMEEQHLRI ENSRLKDELD RVCSLTGKFL GSSNPIPDSS  240
LVLGVGFSTL QPQRFEISNN RTGSVNVSDF DERSRYLDLA LVAMEELVKM AQSREPLWVR  300
SLDSNGFDML NKEEYEKCFS RCVGLKQDGF VTEASKESGT VIINSLALVE TLMDSERWAE  360
MFPFMISRTS TTEIISSGMG GTRNGALHLM HAELQLLSPL VPVRQVSFLR FCKQHAEGVW  420
AVVDVSIDSI REGSSSSCRR LPSGCLVQDM ANGYSKVTWI EHTEYDENRI HRLYRPLLSC  480
GLAFGAQRWM AALQRQCECL TILMSSTVSP SRSPTPISCN GRKSMLKLAK RMTDNFCGGV  540
CASSLQKWSK LNVGNVDEDV RIMTRKSVNV PGEPPGIVLN ASTSVWMPVS PRRLFDFLGN  600
ERLRSEWDIL SNGGPMQEMA HIAKGHDRSN SVSLLRASAI NANQSHMLIL QETSIDAAGA  660
VVVYAPVDIP AMQAVMNGGD SAYVALLPSG FAILPNIQQR EERNGNGNVN GGCMEEGGSL  720
LTVAFQILVN SLPTAKLTVE SVETVNNLIS CTVQKIKAAL HC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442581.10.0PREDICTED: homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A087GZL20.0A0A087GZL2_ARAAL; Uncharacterized protein
STRINGA0A087GZL20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]