PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35261.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 286aa    MW: 32767.5 Da    PI: 6.1994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35261.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C ksF +   L  H+r+H
  KFK35261.1  4 YKCKFCFKSFFNGRALGGHMRSH 26
                9********************99 PP
2zf-C2H216.22.9e-05171193123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ Cgk+F++   L  H  +H
  KFK35261.1 171 YKCETCGKVFKSYQALGGHRASH 193
                 9************9999998887 PP
3zf-C2H210.60.0017221243123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F +   L  H r+H
  KFK35261.1 221 HECPICLRVFASGQALGGHKRSH 243
                 79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.88E-9326No hitNo description
PROSITE profilePS5015711.074434IPR007087Zinc finger, C2H2
PfamPF139123.0E-4427IPR007087Zinc finger, C2H2
SMARTSM003550.026426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.88E-9166193No hitNo description
SuperFamilySSF576677.95E-5169181No hitNo description
PfamPF139121.6E-11170195IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.198171198IPR007087Zinc finger, C2H2
SMARTSM003550.0071171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576677.95E-5212243No hitNo description
PfamPF139124.8E-12221243IPR007087Zinc finger, C2H2
SMARTSM003550.23221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058221243IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESYKCKFCF KSFFNGRALG GHMRSHMVHE EEEEKPSQLS YETESDVVSS SSSEEEEEEE  60
ERNGFGFSES ETEIVNLTRK RSKRTRKLDS FVTKKTKTSQ LGYKTELEVE AEVETETEPP  120
HSSASDTTTE EDLAYCLMML SRDKWKKNKN KEEFVTEESE DCYNNKIKGR YKCETCGKVF  180
KSYQALGGHR ASHKKNNKTE KDNNVSVVVG VVTTTREKRI HECPICLRVF ASGQALGGHK  240
RSHGMMGNNL SVNRYQVHET VVVKERMIDL NLPAPNEEEE VSVVFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191617.11e-119C2H2-like zinc finger protein
RefseqXP_006291511.11e-119zinc finger protein ZAT9
SwissprotQ9M2021e-120ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A087GZF90.0A0A087GZF9_ARAAL; Uncharacterized protein
STRINGA0A087GZF90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-92C2H2-like zinc finger protein