PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35212.1
Common NameSPL12
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SBP
Protein Properties Length: 903aa    MW: 101055 Da    PI: 5.5661
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35212.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.88.3e-40119195278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C+ve+C adls+ ++yhrrhkvCe+hska++++v g++qrfCqqCsrf +l+efDe+krsCrrrLa+hn+rrrk+++
  KFK35212.1 119 CHVENCGADLSKGRDYHRRHKVCEMHSKATSAVVGGVMQRFCQQCSRFQMLEEFDEGKRSCRRRLAGHNKRRRKPNP 195
                 **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.1E-32114180IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.291116193IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-37118198IPR004333Transcription factor, SBP-box
PfamPF031101.3E-29119192IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.207.5E-7700802IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.46E-7703803IPR020683Ankyrin repeat-containing domain
CDDcd002042.56E-9705802No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MEGGRIEGEE GFSGKKNVEW DLNDWKWDGD MFLARELNHH GSSKSSSSCS DERNVEEKKK  60
KKKRDVSVVA MKGDNNLRDG DGDDDDDDDA SRLTLKLGDG NGAKKTKFGG GIPSKGVSCH  120
VENCGADLSK GRDYHRRHKV CEMHSKATSA VVGGVMQRFC QQCSRFQMLE EFDEGKRSCR  180
RRLAGHNKRR RKPNPDTTIG NGSVSSDDQT SSYLLISLLK LLSNIHSNQL DHSGDQDLLS  240
HLLKGLVSQA GEHIGKNLVE LLQGGGGGGL HASQNIGNSS ALLSVEQAPR ENHSVKVPGT  300
PWQEVYANGV QEEAASDRSE KQVKMNDFDL NDIYVDSDDT IEIERSSPFP TNPATSSLDY  360
HQDSRQSSPP QTRRNSDSAS ASNQSPSSSN GDAQSRTDRI VFKLFGRVPN DFPLALRGQI  420
LDWLAHSPTD IESYIRPGCI VFTIYLRQDE ASWEELCCDL SFSLKRLLDL SDDPLWIDGW  480
IYVRVQNQLA FAFNGQVVLN TSLPLRSHDY SQIITVRPLA VTRKAQFTVK GINLLQPGTR  540
LLCAVEGTYL VQEETQEVME ERDDFVKFSC EMPITSGRGF MEIEDQSGLS SSFFPFIVSE  600
DEDVCSEIRR LETTLEFTGT DSANQAMDFI HEIGWLLHRN ELKPRLEESD PEPVDLFSLL  660
RFKFLIEFSI DREWCAVIKK LLNVLFEEGT VDSSPIAALS ELCLLHRAVR KNSKPLVEML  720
LRYIPNKQQT LSGLFRPDAA GPAGLTPLHI AAGKDGSEDV LDALTEDPGM IGIQAWKNSR  780
DSTGFTPEDY ARLRGHFSYI HLVQRKLNWK PIVKEEHVVV NIPESFNIDQ KQEKKLDQCS  840
LCVHKRPVVI TTQQKSVTYR PAMLSMVAIA AVCVCVALLF KSCPEVLFVF QPFRWELLEF  900
GTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28110192184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763KKKKKKR
2175192KRSCRRRLAGHNKRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00060PBMTransfer from AT3G60030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878311.10.0squamosa promoter-binding-like protein 12
RefseqXP_020880464.10.0squamosa promoter-binding-like protein 12
RefseqXP_020880465.10.0squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLS4WZV50.0S4WZV5_ARAAL; SQUAMOSA promoter binding protein-like protein 12
STRINGS4WZV50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Bergonzi S, et al.
    Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina.
    Science, 2013. 340(6136): p. 1094-7
    [PMID:23723236]
  3. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  4. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]