PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK35079.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 356aa    MW: 40452.6 Da    PI: 8.6571
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK35079.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.41e-25205259156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+++ W++eL +rF++a++qLGG++ AtPk+i+elmkv+gLt +++kSHLQkYR++
  KFK35079.1 205 KEKRIWSQELQKRFLNALKQLGGPH-ATPKQIKELMKVDGLTSDQIKSHLQKYRMH 259
                 57899******************98.****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.038202261IPR017930Myb domain
SuperFamilySSF466892.48E-18203262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-24203262IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24205259IPR006447Myb domain, plants
PfamPF002497.3E-8210257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIKNLSNMKN YNAKRERCCE YIEALEEERR KINVFYRELP LCLKLVTQAI EAYKKEISET  60
TTKNLYKRSE CLEGTTGECR PVLDLFIPIK HSPTSTEEED EVDDDDEHKS HETLTCFDDK  120
NMKSEWLKSV QLWNQPEAVL SNNNSECSKE ETETVVEIIK GAASRYETSN GKNYNVKSPA  180
TSSGGGGQKK EADKAGIHSG KGRRKEKRIW SQELQKRFLN ALKQLGGPHA TPKQIKELMK  240
VDGLTSDQIK SHLQKYRMHT RRSSQTNPNN INFETPHLVV VGEIWVPQAN YSTANAATLG  300
ETPTGIYWSM RSPNRSNFCH TVLEERSKCS NKGIFRCNSS AMSSSTPTKT KYANIL
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK35079.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881607.11e-147transcription factor HHO1 isoform X1
SwissprotQ9LS001e-144HHO1_ARATH; Transcription factor HHO1
TrEMBLA0A087GYX70.0A0A087GYX7_ARAAL; Myb family transcription factor
STRINGA0A087GYX70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-146G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]