PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK34671.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 312aa MW: 35241.1 Da PI: 10.1262

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK34671.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.3e-16	40	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ ++ s +p++++l+ KFK34671.1 40 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVAKHVssrtNQTKSPKTQTQCKNKIESMKKRYRSESATTTT---PDGSCWPLYSRLD 126 5***********************************9888888889999*************999996...45569***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-19	38	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEEGESKQEN PQPLNTVPNH DNSSLKKPSV SVVDRLKRDE WSEGAVSSLL EAYETKWVLR 60 NRAKLKGQDW EDVAKHVSSR TNQTKSPKTQ TQCKNKIESM KKRYRSESAT TTTPDGSCWP 120 LYSRLDHLLR GTPSSSLQPQ PQPQAVVPLN CSVPLLLLEP PSPLVAPPSQ PQISHGSNGV 180 NKTPKEDGFK TEKYPATEMD TDSSTPVISR DKAKMRPKKK VKTRRYREEK KEEEIAGSIR 240 WLAEVVMRTE RARMETMKEI EKMRGEAEVK RGEIDLKRTE IMANTQIEIA RLFAVAVSGH 300 KGVDSSLRIG RN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK34671.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403581.1	1e-160	trihelix transcription factor ASIL1
TrEMBL	A0A087GXR9	0.0	A0A087GXR9_ARAAL; Uncharacterized protein
STRING	A0A087GXR9	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-132	sequence-specific DNA binding transcription factors