PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34581.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 270aa    MW: 30994.6 Da    PI: 4.6087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34581.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-191199195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ffkv+     ++s  l +p +f+e+  ++   + t +l+ + gr+W++ +  +k +++ ++t+GW++F+++++Lk+g+f++F +d +++fe  v 
  KFK34581.1 11 FFKVF--LAETASESLAIPLSFTEQLRNP--LPHTAKLRGTGGRVWTLSM--NKVREGAYFTTGWSKFAEEHNLKSGEFLTFVYDCNRTFEVSVY 99
                78888..555556669*******988755..888****************..********************************99888855554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-227104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-238104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.8319102IPR003340B3 DNA binding domain
CDDcd100171.19E-17999No hitNo description
PfamPF023623.8E-161199IPR003340B3 DNA binding domain
SMARTSM010193.2E-2011102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-9176257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-7176267IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.16179267IPR003340B3 DNA binding domain
PROSITE profilePS508636.273232270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAPNRVRFPR FFKVFLAETA SESLAIPLSF TEQLRNPLPH TAKLRGTGGR VWTLSMNKVR  60
EGAYFTTGWS KFAEEHNLKS GEFLTFVYDC NRTFEVSVYG RSCCKEIRAV AQVVELSDSD  120
SEEEEEEEDT IMEETDDEVG FSDDQEINQS VYPLEEEETE TEIDTIGNSN LDGVANPCFD  180
TNLKARIYEL LIPAQTVKDH DLRFGETIKY IDGEGTLEGE RGKWTDDRIC FKGWDRICRR  240
NRLKEKDTVT CELLHTRNKV HSVKVHVTRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-231010410104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103858.11e-116PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_013647917.11e-116B3 domain-containing protein REM20-like
RefseqXP_013647918.11e-116B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-101REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A087GXH90.0A0A087GXH9_ARAAL; Uncharacterized protein
STRINGA0A087GXH90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-94B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]