PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34004.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 274aa    MW: 31551.1 Da    PI: 8.4441
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34004.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-14231001696
                 EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 + l  +f++++ + ++ ++++t+++ +sg +W++ ++ ++ s++++l++GWk+ vk+ +Lke   +vF++dg++ f  ++ v
  KFK34004.1  23 MNL--PFVSDNISGTPLPRKVTVKNvSSGSVWKMVMTTNGESNTVLLQDGWKKIVKDMNLKEPTLLVFEFDGSRVF--HFCV 100
                 444..48889955567999******9999********9*******************************9997777..5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.6461104IPR003340B3 DNA binding domain
CDDcd100171.66E-103101No hitNo description
SuperFamilySSF1019368.44E-164102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-135102IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-1110104IPR003340B3 DNA binding domain
PfamPF023623.0E-112699IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-5184260IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNTQDSVQSF FRVYMPNKTN DDMNLPFVSD NISGTPLPRK VTVKNVSSGS VWKMVMTTNG  60
ESNTVLLQDG WKKIVKDMNL KEPTLLVFEF DGSRVFHFCV YEDSSMCKKM RSPLAKEVIE  120
VDSEESDDDD DVIEEDTESK TEFNESPKRK ERGGTSSRRR QYLKSDSHKF VEYLDDKLNP  180
SFPVDVIKER TRIPAVLIRD YNLTFPKMVI VRDKFNKLER KITIWKNGSV FLNGVGSITR  240
RNHAKPGDKM VCELKMVDGY HGLVHEIKVH VIKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875801.11e-129B3 domain-containing protein REM22
SwissprotQ9STF11e-129REM22_ARATH; B3 domain-containing protein REM22
TrEMBLA0A087GVV20.0A0A087GVV2_ARAAL; Uncharacterized protein
STRINGA0A087GVV20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16649810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-120B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]