PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33991.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 591aa    MW: 67204.9 Da    PI: 5.261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33991.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.94.2e-1212175871374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 +++lL++cA+ v+s d+++a + L++++ ++s++gd++qRl  +f+eAL+ar+++    l+ +  + ++s++++++ l+a+++f +++P l ++++taN
  KFK33991.1 217 MRNLLMQCAQSVASFDQRRAVEKLKEIRAHSSSQGDATQRLGYHFAEALEARITG----LMTTPVTATSSRTSMVDILKAFQAFAQACPSLIMCYFTAN 311
                 579****************************************************....77777777777788************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++ +++++++HiiDf+i +G+QWp+L++aL++Rp+gpp lR+Tg++ p+sg   +e++eetg+rL++f+++++vpfe+++ +ak++e+++l+eL +
  KFK33991.1 312 RTIYDLASKATTLHIIDFGILYGFQWPCLIRALSARPGGPPLLRVTGIELPQSGfrPSERVEETGRRLKRFCDKFNVPFEYSF-IAKKWETITLDELVI 409
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gE+++Vn++l+l+++ de+vsl+s+rd+ Lkl+++++P+++ ++e +  +ns+ Fl+rf eal ++s+lfd++e+++ +++e r+ vErel+ r+++
  KFK33991.1 410 NSGETTVVNCILRLQYTADETVSLNSPRDTALKLFRDINPDLFLFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTIQEDNECRTLVERELIIRDAM 508
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +v+a egaer++r et+++W+ r+ +aGF+pv+ls++++k+ k ++r+ + + + ++++++++++gWk+r L+++S+W+
  KFK33991.1 509 SVIAYEGAERFARPETYKQWQVRILRAGFRPVKLSKQIMKDGKQIVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 587
                 **************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.41191567IPR005202Transcription factor GRAS
PfamPF035141.5E-118217587IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNIES GTNHFTCFNE SESQKPSSPT ESTVYLPVFK  60
YINDMLMEED LEGQSCMLED SLALQAAERS FFEVLQDQTP PPSDQVSSEI EEDYSFFDNL  120
SSITSLHQPN LDVTDSPAEV STRKYRHRDD DEDDYEGGRK SKLPAISTVD ELAEKLESVL  180
LVCKSDDHGE ATPNKTGQAK GSSNRAKSQK SDQPVDMRNL LMQCAQSVAS FDQRRAVEKL  240
KEIRAHSSSQ GDATQRLGYH FAEALEARIT GLMTTPVTAT SSRTSMVDIL KAFQAFAQAC  300
PSLIMCYFTA NRTIYDLASK ATTLHIIDFG ILYGFQWPCL IRALSARPGG PPLLRVTGIE  360
LPQSGFRPSE RVEETGRRLK RFCDKFNVPF EYSFIAKKWE TITLDELVIN SGETTVVNCI  420
LRLQYTADET VSLNSPRDTA LKLFRDINPD LFLFAEINGT YNSPFFLTRF REALFHCSSL  480
FDMYETTIQE DNECRTLVER ELIIRDAMSV IAYEGAERFA RPETYKQWQV RILRAGFRPV  540
KLSKQIMKDG KQIVRERYHK DFVIDNDNHW MFQGWKGRVL YALSCWKPVK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-452015881379Protein SCARECROW
5b3h_D1e-452015881379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527110.0AK352711.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875794.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A087GVT90.0A0A087GVT9_ARAAL; Uncharacterized protein
STRINGA0A087GVT90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]