PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33772.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 269aa    MW: 30650.6 Da    PI: 10.1595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33772.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-162267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
       KFK33772.1 22 RGHWKISEDSQLMELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 67
                     799*****************************.***********996 PP
2Myb_DNA-binding50.83.9e-1675118247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
       KFK33772.1  75 RAFSDEEEERLLTAHRAFGNK-WSMIAKLFN-GRTDNALKNHWHVL 118
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3551768IPR017930Myb domain
SMARTSM007171.8E-112170IPR001005SANT/Myb domain
PfamPF002492.8E-152267IPR001005SANT/Myb domain
SuperFamilySSF466892.64E-2722115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-252375IPR009057Homeodomain-like
CDDcd001671.64E-102566No hitNo description
PROSITE profilePS5129425.15669123IPR017930Myb domain
SMARTSM007172.9E-1373121IPR001005SANT/Myb domain
PfamPF002491.2E-1275118IPR001005SANT/Myb domain
CDDcd001671.61E-976119No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2076124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQKESEVSKK TKKKSGFRVC SRGHWKISED SQLMELVAVY GPQNWNHIAE KMQGRTGKSC  60
RLRWFNQLDP RINKRAFSDE EEERLLTAHR AFGNKWSMIA KLFNGRTDNA LKNHWHVLMA  120
RQLKQQSSSF IRRSNGSSQN PIADHKSYNL PLGTVNDEDM NFKKHSWKML EEGTTNLKAQ  180
YLQEEHCSSR MPMQGPHHHC STFPADSLAL TLHVSIHKPP SSSSSSSSSL SSLSLPSTSD  240
NTMVTRYFET MKPPAFIDFL GVGHQSSNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-30221234105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727321e-119AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395314.11e-145transcription factor MYB117
TrEMBLA0A087GV700.0A0A087GV70_ARAAL; Uncharacterized protein
STRINGA0A087GV700.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-133myb domain protein 110