PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33379.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 590aa    MW: 64594.4 Da    PI: 5.7221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33379.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.13.9e-1352255851374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAea+++++l+la+al++++  la ++  +m+++a yf+eALa+r++r         pp+++ + + s++l++   f+e++P+lkf+h+taN
  KFK33379.1 225 LVHALMACAEAIQKNNLSLAEALVKQIGFLAVSQSGAMRKVALYFAEALARRIYR-------LSPPKNQIDLSLSDTLQM--HFYETCPYLKFAHFTAN 314
                 689****************************************************.......224444443334444444..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+eg++rvH+iDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p+ ++++ l+e+g +La++A++++v+fe++ +va++l+dl+  +L++++
  KFK33379.1 315 QAILEAFEGKKRVHVIDFSMNQGLQWPALMQALAVREGGPPIFRLTGIGPPSMDNTDHLHEVGCKLAQLADAINVKFEYRGFVANSLADLDATMLEIRS 413
                 ***********************************************************************************************9999 PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    E++aVn+v+ lh+ll +++++e+    vL +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s++++++++++lg++i+
  KFK33379.1 414 teIESVAVNSVFDLHKLLGRPGAIEK----VLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGA---PSSQDKVMSEVYLGKQIC 505
                 7799********************99....*********************************************999...79999************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+vaceg +r+erhetl++W +r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  KFK33379.1 506 NLVACEGPDRVERHETLNQWTNRFGSSGFVPAHLGSNAFKQASMLLALFNgGEGYRVEESNGCLMLGWHTRPLITTSAWK 585
                 *******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.7E-3541107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.2E-3841115No hitNo description
PROSITE profilePS5098565.29199564IPR005202Transcription factor GRAS
PfamPF035141.3E-132225585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MKRDLHLFQN PKPPITGSSS SSPAPATCGK EKMMMVKEEE DELLAVLGYK VRSSEMAEVA  60
LKLEQLETMM GNVQEDGLSH LATDTIHYNP SELYSWLDSM LSELNPSDPM LVSPEIDNNN  120
SFLAGDSSTI TSIGGFPASD YDLKAIPGNA IYRRSNQFAI DSSSSSSNQN NNKRLKSCSS  180
PDSMVTSTSN APLIGTTVTT TTTAAAAEST RAVILVDSQE NGVRLVHALM ACAEAIQKNN  240
LSLAEALVKQ IGFLAVSQSG AMRKVALYFA EALARRIYRL SPPKNQIDLS LSDTLQMHFY  300
ETCPYLKFAH FTANQAILEA FEGKKRVHVI DFSMNQGLQW PALMQALAVR EGGPPIFRLT  360
GIGPPSMDNT DHLHEVGCKL AQLADAINVK FEYRGFVANS LADLDATMLE IRSTEIESVA  420
VNSVFDLHKL LGRPGAIEKV LGVVKQIKPV IFTVVEQESN HNGPVFLDRF TESLHYYSTL  480
FDSLEGAPSS QDKVMSEVYL GKQICNLVAC EGPDRVERHE TLNQWTNRFG SSGFVPAHLG  540
SNAFKQASML LALFNGGEGY RVEESNGCLM LGWHTRPLIT TSAWKLTAVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6422058414378Protein SCARECROW
5b3h_A5e-6422058413377Protein SCARECROW
5b3h_D5e-6422058413377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395878.10.0DELLA protein RGA2
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A087GU270.0A0A087GU27_ARAAL; Rga1 protein
STRINGA0A087GU270.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein