PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK33352.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 226aa    MW: 25076.8 Da    PI: 10.8702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK33352.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-1363109354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+ +ErrRR riN  fe+Lr++lP++      K +Ka++L +++++ ++L
  KFK33352.1  63 KKHSDAERRRRFRINGQFETLRTILPNL-----VKHDKASVLGETIRHFNEL 109
                 68*************************9.....7*************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1351115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1063109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-1163114No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1364114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.6E-4137200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVLLQHLEQG IRPISRCYNP TTYSTTIGRN FFTSATTSSK LFSRGFSVVK PKSKTESKEV  60
AAKKHSDAER RRRFRINGQF ETLRTILPNL VKHDKASVLG ETIRHFNELK KMVKDIPTTP  120
SLEDNLRLGH CNNKDMARIV FSCNDKEGLM TEVAKAMKTS NAKAVRAEIM TVGGRTKCAL  180
FVQGVNGNEG LIKLKKSLKH VVNGKSSSSE AKNNNNNNNG GSLLPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK33352.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411819.11e-127transcription factor bHLH131
SwissprotP0CB251e-123BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A087GU001e-165A0A087GU00_ARAAL; Uncharacterized protein
STRINGA0A087GU001e-166(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-110bHLH family protein