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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
KFK32783.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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| Family |
GRF |
| Protein Properties |
Length: 515aa MW: 55481.6 Da PI: 9.3829 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KFK32783.1 | genome | MPIPBR | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 78.3 | 7.3e-25 | 189 | 233 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
KFK32783.1 189 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 233
79****************************************985 PP
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| 2 | QLQ | 49.9 | 1e-17 | 125 | 161 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
++F+ +Q+++L++Q+l+yKy+ an PvP+ Ll+ ++k
KFK32783.1 125 GPFSLTQWAELEQQALIYKYITANIPVPSSLLLSLKK 161
59******************************99875 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 515 aa
Download sequence Send
to blast |
MDLGVRVQGS VSGHENGSPG QPELGSSLSS KQERYGFDGE DCWRSSKVAR TTPETMSFHQ 60
GIPLLRSTSI LSSDPRNRQE HMLSFSSDKS DVSPYLQYCK NSGYGLGGMM NTSSMHGNLL 120
TGVKGPFSLT QWAELEQQAL IYKYITANIP VPSSLLLSLK KSFFPYGSLP PNSFGWGSFH 180
LGFSGGNMDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI NRGRHRSRKP VEGQNGHNTT 240
NAAAAASTAA SKAVATTVVA MRGSDNNNSL ASVGNHHLHA NPSTDSLANR VQISRGGSVY 300
PASMNLQLKE SHPKQSNNPF EFGLISSDSL LNPSHKQASY ANSSKGFGSY LDFSNQAKHS 360
GNHHNVDSWP EELKSDWTQL SMSIPMAPSS PVQDKLALSP LRLSREFDPA IHMGLGVNTE 420
FLEPAKKVNN WIPISWGNHN SMGGPLGEVL NSTTNSPKFG SSPTGVLQKS TFGSLSNSSS 480
GSSTVVGENN HKNGDGKDPL GPTTLMNSSA TAPSL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
| Publications
? help Back to Top |
- Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
Plant Cell, 2013. 25(9): p. 3570-83
[PMID:24076976] - Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
PLoS ONE, 2014. 9(5): p. e98477
[PMID:24875638] - Cao Y,Han Y,Jin Q,Lin Y,Cai Y
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
Front Plant Sci, 2016. 7: p. 1750
[PMID:27933074]
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