PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

WRKY

Protein Properties

Length: 299aa MW: 32379.7 Da PI: 10.2062

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK32753.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.3e-32	223	280	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+d++++++tYeg+Hnh+ KFK32753.1 223 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDGSMLIVTYEGDHNHS 280 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.0E-14	173	219	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.6E-33	208	280	IPR003657	WRKY domain
PROSITE profile	PS50811	30.354	216	282	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-27	219	281	IPR003657	WRKY domain
SMART	SM00774	1.0E-37	221	281	IPR003657	WRKY domain
Pfam	PF03106	3.2E-27	223	279	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAVELMTRNY ISSVGADSFA VQEAAASGLK SMENFIGLMS RETLNSDQPS SSSSAAVSAA 60 DLELARNTTA DAAVSKFKRV ISLLDRTRTG HARFRRAPVI SQEPKATPFQ APLPPPPMMI 120 RKGSFSSSMK TIDFSSLSSV TTESEHEKKH HRPSETAPFM SQTTVSSFSK SSKRKCNSAN 180 LLAGKCSSAS SGRCHCSKKR KMKEKRVTRV PAISAKMSDV PPDDYSWRKY GQKPIKGSPH 240 PRGYYKCSSV RGCPARKHVE RAADDGSMLI VTYEGDHNHS LSAADLAGDA VADLILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	208	281	1	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00275	DAP	Transfer from AT2G23320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK32753.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294625.1	1e-171	probable WRKY transcription factor 15
Refseq	XP_010429281.1	1e-171	PREDICTED: probable WRKY transcription factor 15
Swissprot	O22176	1e-172	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A087GSA1	0.0	A0A087GSA1_ARAAL; Uncharacterized protein
STRING	A0A087GSA1	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	1e-152	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]