PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32658.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 611aa    MW: 69576.8 Da    PI: 6.4559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32658.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15160246195
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ffk l     + s+ l++p  f+ ++ +g +e+  + +l++  s  +Wevk+  +  +++  lt+GWkeF+ +++L++gD+vvF+ ++++ f  +v+
  KFK32658.1 160 FFKPL--LPGFHSH-LTIPEAFFLKYmKGRTEQ-SMAKLRSdASKITWEVKV--EEDGQK--LTDGWKEFALSHDLRVGDIVVFRQERDMAF--HVT 246
                 66666..5667777.***********6555555.588888758889******..777766..***********************7777877..766 PP
2B370.71.9e-22281370394
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  + +++++l+s+rl lp++f++++g++k+++ +++l++e+g+sW+  l+ +++ + ++++ GW++F++angLk g f +Fkl+ r  ++  v+
  KFK32658.1 281 VANVTPSTLQSDRLNLPRSFVRANGLDKKRG-EIVLMNEKGQSWTSDLKGKRSCRVTYIKHGWRSFCHANGLKPGGFYTFKLIIReGST--VL 370
                 56789999*****************999887.****************88888888*************************99642333..44 PP
3B352.11.2e-16511604198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f++ ++++++ k+++l lp +f + +g++  e +++ l d++g  W  +l  r  + r+ l +GWk+Fvkan +k+ ++v ++l++++++++v+k+++
  KFK32658.1 511 FVTLTLTPYNVKKSILFLPIPFSRINGISV-E-TKMALLDKHGVNWPTNL--RSERTRIKLVGGWKDFVKANCVKTSESVKLELIWKEDTSCVLKFCS 604
                 67788899**************97777664.3.58***************..999999******************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF034783.9E-85898IPR005174Domain unknown function DUF295
Gene3DG3DSA:2.40.330.108.7E-24155264IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.815157251IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-19158258IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-15159248No hitNo description
SMARTSM010194.6E-23160251IPR003340B3 DNA binding domain
PfamPF023622.7E-11168243IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-21274366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-19276367IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.086279376IPR003340B3 DNA binding domain
CDDcd100171.96E-20279373No hitNo description
SMARTSM010192.3E-26280376IPR003340B3 DNA binding domain
PfamPF023623.1E-21281370IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17503603IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18505603IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-11510603No hitNo description
PfamPF023621.8E-15511604IPR003340B3 DNA binding domain
SMARTSM010192.7E-23511606IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548511606IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MPSQPLTRRS INHLVRSGDD DELFLVERFD PYPQPELIRF QRFACRVSML DEEAGKWVEV  60
SDLGDRVFFI GHYDNVACSA KELPSGCGLS GNSIVFTSMG PIANAYKYGV ETGHEEDEPN  120
WWRVSNENSV NCLWTSPVVA EGVNRGMQLS TSPVMAKQHF FKPLLPGFHS HLTIPEAFFL  180
KYMKGRTEQS MAKLRSDASK ITWEVKVEED GQKLTDGWKE FALSHDLRVG DIVVFRQERD  240
MAFHVTPFGP SCCEIQYESC LDNENNLGKK NPRREKESCF VANVTPSTLQ SDRLNLPRSF  300
VRANGLDKKR GEIVLMNEKG QSWTSDLKGK RSCRVTYIKH GWRSFCHANG LKPGGFYTFK  360
LIIREGSTVL RLLSEESEEE EYSEGDEIES LSTESESDEE RNPEMIQMKK KVKKNPRREA  420
ESTSLEPSCF VANVSPATLR YDSLNLPRPF VRTNGLDTSI GEIVLMNEKE SEEEEESSES  480
ESNEEGYQEE KGLKKRRSIW KASSSPSENR FVTLTLTPYN VKKSILFLPI PFSRINGISV  540
ETKMALLDKH GVNWPTNLRS ERTRIKLVGG WKDFVKANCV KTSESVKLEL IWKEDTSCVL  600
KFCSIVKPMT K
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885760.10.0B3 domain-containing protein REM14 isoform X2
SwissprotO230761e-166REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A087GS060.0A0A087GS06_ARAAL; Uncharacterized protein
STRINGA0A087GS060.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]