PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32624.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 441aa    MW: 49341.3 Da    PI: 10.5939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32624.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-1844137398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +l+++++l+++ l lpk  ++  g+k +  ++++l+ e  rsW++ l++++ s+++++++GW++F+++ng k++Df++Fkl+g +++++++++ r
  KFK32624.1  44 VALVKASNLQNDTLNLPKGVISPKGLK-RICRKIVLTEEGKRSWTLDLRFNNLSNTFYISRGWRNFCDENGKKAKDFFIFKLVG-NGATPLLSFSR 137
                 568899***************777777.6778**************************************************99.67767777665 PP
2B3612e-19184272193
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f++ ++++d l++grl lp +f++e+g++k++  ++tl  ++g +W  +l  r   gr+ l+kGWkeF+kang k gD++ ++l+  ++++ +
  KFK32624.1 184 FITRTVTHDCLRNGRLHLPLSFMRENGLDKPG--MITLVGKDGTKWLTNL-NREATGRMSLGKGWKEFAKANGFKIGDSFKLELIL-ENGTAT 272
                 7788999**********************776..8***************.46666779************************985.333334 PP
3B345.51.3e-14349437598
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 l+p+dv + + l lp +f+++hg++k +  ++tl  ++g  ++ +     ++g + l+ GWk+F++ ng+++g+++++++++++++++v+k+++
  KFK32624.1 349 LVPEDVRA-CTLHLPSQFMRAHGIDKLG--KITLLGKDGMDYSAYR--LSRDGFVALGIGWKGFCETNGVQTGESFTLEFIHEQDATPVLKFHS 437
                 66666665.67************99766..8***********9999..889999*****************************9999*999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1737136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-1741136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.67642138IPR003340B3 DNA binding domain
CDDcd100171.52E-1442137No hitNo description
SMARTSM010191.4E-2243139IPR003340B3 DNA binding domain
PfamPF023626.7E-1644137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-20174269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20182270IPR015300DNA-binding pseudobarrel domain
CDDcd100179.95E-19183270No hitNo description
PROSITE profilePS5086315.509184279IPR003340B3 DNA binding domain
SMARTSM010193.7E-27184279IPR003340B3 DNA binding domain
PfamPF023621.4E-18184274IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-16339438IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-16340439IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278344438IPR003340B3 DNA binding domain
SMARTSM010192.0E-15344439IPR003340B3 DNA binding domain
CDDcd100176.67E-10348424No hitNo description
PfamPF023622.9E-13351437IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MKKKNLHPRT EESISSNEDN TELARKKKSK KNNSETQVDS SSFVALVKAS NLQNDTLNLP  60
KGVISPKGLK RICRKIVLTE EGKRSWTLDL RFNNLSNTFY ISRGWRNFCD ENGKKAKDFF  120
IFKLVGNGAT PLLSFSRAMS GGGKSSKKAS LLIEPSGGKN ISKEKRKKNH LRYRDSTSSN  180
INRFITRTVT HDCLRNGRLH LPLSFMRENG LDKPGMITLV GKDGTKWLTN LNREATGRMS  240
LGKGWKEFAK ANGFKIGDSF KLELILENGT ATLSLVNKDS TSDPRQRGKC SKDSEKESIS  300
TYPSNGKKTI KDKDNREKKS SRTLVQKKCH SNIKDSLSPM QNRSVTMTLV PEDVRACTLH  360
LPSQFMRAHG IDKLGKITLL GKDGMDYSAY RLSRDGFVAL GIGWKGFCET NGVQTGESFT  420
LEFIHEQDAT PVLKFHSNCG D
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180044.21e-152transcriptional factor B3 family protein
SwissprotP0CAP41e-153REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A087GRX20.0A0A087GRX2_ARAAL; Uncharacterized protein
STRINGA0A087GRX20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-154B3 family protein