PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK32622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16677.6 Da PI: 5.2738 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.6 | 9.2e-13 | 5 | 62 | 32 | 89 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 s +++++d rsW ++l+++k s+++++++GW++F ++n ++g +vF+l+g+ e KFK32622.1 5 FSAEIVITDGGERSWALYLRFNKISDTFYISRGWRSFYDENCKRAGSLFVFRLVGNGE 62 5789*************************************************99643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.464 | 1 | 71 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.03E-10 | 1 | 68 | No hit | No description |
SuperFamily | SSF101936 | 1.43E-12 | 5 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-10 | 5 | 63 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0021 | 5 | 72 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-11 | 6 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSESFSAEIV ITDGGERSWA LYLRFNKISD TFYISRGWRS FYDENCKRAG SLFVFRLVGN 60 GEVPLLSFSP AESRGDKSCS KESLPVESIE KNYLTSRDST PPSQNRFVTL TFTHDTELNC 120 RQVLDPRWKM LQNEAVPVSG QSNTSTE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK32622.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019083487.1 | 1e-34 | PREDICTED: B3 domain-containing protein REM12-like isoform X2 | ||||
Swissprot | P0CAP4 | 2e-34 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A087GRX0 | 1e-104 | A0A087GRX0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GRX0 | 1e-105 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 9e-37 | B3 family protein |