PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32619.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 583aa    MW: 66576.7 Da    PI: 7.5897
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32619.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.9e-1214821487
                T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3 14 grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                  lv+pk+f++++ +gk+    t+ l++ ++   W+vk+   +++    l +GW+eF+ an+L+ gD+++ +++++
  KFK32619.1 14 THLVIPKDFFSKYiQGKSVD-DTVELKSdSTDINWKVKM--IGRR----LNDGWEEFAVANRLQIGDVLLVRYEDD 82
                459**********8555444.58999985777*******..7887....9*********************98653 PP
2B360.43.1e-19235327499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++++  +++r++lp  f++e+ ++k++  ++tl  ++g + + +l  ++ +g++ l++GW++Fv+ n+Lk gD+++Fkl++ +++++v++++++
  KFK32619.1 235 LTITPYCIRKSRMRLPPCFTKENAINKPG--MITLLGKDGLKQQANLLLDNARGTMSLGSGWNSFVEKNDLKIGDSFTFKLIW-EDTTPVLRLCDA 327
                 5789999****************999766..8********999999999**********************************.8999*****997 PP
3B353.34.9e-17388480398
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + +++++ +++grl lp  f++++g++k++  ++tl  ++g +   kl  +k    + l++GWk Fv++ngLk+gD++++kl++ +++++v++++ 
  KFK32619.1 388 TLTITPYRFRKGRLPLPAWFTKDNGINKPG--MITLLGKDGIKHPTKLLLDKVNAVMALGGGWKPFVEENGLKTGDSFTLKLIW-EDKTPVLSLCP 480
                 56789********************99766..8***************99999999****************************.88889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.209193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-15394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-13497IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-10588No hitNo description
SMARTSM010196.0E-16793IPR003340B3 DNA binding domain
PfamPF023622.6E-81481IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-18222329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20229325IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.042232328IPR003340B3 DNA binding domain
SMARTSM010199.6E-28232328IPR003340B3 DNA binding domain
CDDcd100171.29E-16232326No hitNo description
PfamPF023629.4E-19234327IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-18381485IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-21382482IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942386482IPR003340B3 DNA binding domain
SMARTSM010191.1E-24386482IPR003340B3 DNA binding domain
PfamPF023626.8E-17388481IPR003340B3 DNA binding domain
CDDcd100177.29E-17397480No hitNo description
Gene3DG3DSA:2.40.330.106.2E-5534581IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAKPPQFFHT LVNTHLVIPK DFFSKYIQGK SVDDTVELKS DSTDINWKVK MIGRRLNDGW  60
EEFAVANRLQ IGDVLLVRYE DDLVLHVSNL GPNCSETRDN NNDDQNNIGK LLLKKRMYPK  120
AELDDDDDGD MELPIKKKVK KSLYTEVSCD VENIKVESIE DECSSMEIES SEDEYRLMES  180
LLEIEKTKHT IDREQEDKER ESPFIDSSNR DKIKRDESNK EESRSRERNK NYMTLTITPY  240
CIRKSRMRLP PCFTKENAIN KPGMITLLGK DGLKQQANLL LDNARGTMSL GSGWNSFVEK  300
NDLKIGDSFT FKLIWEDTTP VLRLCDAESP FKTNKKTSPF KTNKKESPFI DSSNRDKINR  360
DEITKEERNK NYLRAKDTTL PSENQLVTLT ITPYRFRKGR LPLPAWFTKD NGINKPGMIT  420
LLGKDGIKHP TKLLLDKVNA VMALGGGWKP FVEENGLKTG DSFTLKLIWE DKTPVLSLCP  480
AERSIDKVGG GCSETNQKNS LPVEPSSCKK ISNDENSKDE YKPIERENTH LRGRDSTPSC  540
QKQFVTLKVT PSCFTNCRLI LPTEFAKENS MNKPGVIYLV GKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014112.11e-130B3 domain-containing protein REM13
SwissprotP0CAP51e-108REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A087GRW70.0A0A087GRW7_ARAAL; Uncharacterized protein (Fragment)
STRINGA0A087GRW70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-109DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]