PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32533.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 291aa    MW: 33265.8 Da    PI: 8.8577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32533.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07106125626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+ f++ G C+ Gd+C F+Hg
  KFK32533.1 106 CPEFRK-GVCRKGDSCEFSHG 125
                 ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-4100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258101127IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5106125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001106127IPR000571Zinc finger, CCCH-type
SMARTSM0035623135158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.071135159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMIGENRRPH PTIHIPPRND PTVTVSSPFS PSSPNLESLS PLFRYLPSND SNSDESVLDS  60
FRMYEFKVRR CTRGRSHDWC ECPFAHQGEK ARRRDPRKYH YSGTSCPEFR KGVCRKGDSC  120
EFSHGVFECW LHPDRYRTQP CKDGTSCKRR ICFFAHTHEQ LRVDLDLDLG GIDSFRNRFE  180
SRLSKLVIAS TSPTSILVSP PFSPPSVSPP ISPSTSELMR KVQLNPWSSP MRSGLGLPLR  240
SRSVLSQRQG LREMDMWDNV GEEIPAMEVV ESGKELRAMM YARLSRENSL V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408830.11e-124zinc finger CCCH domain-containing protein 23
SwissprotO823071e-110C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A087GRN10.0A0A087GRN1_ARAAL; Uncharacterized protein
STRINGA0A087GRN10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.22e-96C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]