 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
KFK32291.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
| Family |
AP2 |
| Protein Properties |
Length: 420aa MW: 46596.4 Da PI: 7.0047 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KFK32291.1 | genome | MPIPBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.7 | 5e-17 | 116 | 165 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
KFK32291.1 116 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 165
78*******************......55************************997 PP
|
| 2 | AP2 | 40 | 9.6e-13 | 208 | 255 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ +
KFK32291.1 208 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIN 255
89********.7******5553..2.26**********99*********975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MLDLNLDAES TQYVDRQTSD GLEESGTSTS SVINADGDEE SCSFTLSFDI LKVGGGDESP 60
ASVTKEFFPV AGDCGHLRDA EGSSSRSWID LGETKLVAPV PAPVKKSRRG PRSRSSQYRG 120
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFTLSDYQED 180
MKQVQNLSKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD 240
SEVEAARAYD KAAINSNGRE AVTNFELSSY QNETNDNGVH DKLDLNLGIS LSPGNATKQN 300
GRLFHVPSNT YETQRGVSLR IDNEFMGKPV NTSLPYGSLD HRVYWNGACP SYNNAVEGRA 360
TEKRSEGEGM MSNWGWQTSA VRPQPPPPLF SVAAASSGFS HFRQQTPNDN ASRAYFYPQP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF003100 | 1e-110 | AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds. |
| GenBank | AF325074 | 1e-110 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
| GenBank | AY050815 | 1e-110 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
| GenBank | AY091418 | 1e-110 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
